Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1456 ATGAACCTGCTGTCAAACCATCACCGCCGCTGTGCTATGGAGCAGAGTGAGCCACGCCTGCGCTATTGGGGGTCTCACTGCTACCAGAGAAGGATTCTGGTCACCGCAGGTGTTGCTGTGAAGCTGCGCCTCTGTGTTTCTGACCGCCGGAGCTCCGGGCTGAGCTTCTGCCACTTGAGACCCTGCTTCCACCGTGTTCCACCGCCGAGAGTACCAGATAATTTTCTGAGAAAATATGGGGGTGAGCTTTCCTCCTTTGTTAACCTATCTGTTCCCGAGGGTAGTTCGTGGCATGTGGGACTGAAAAAGGTAGACAACAAATTTTGGTTCATTGATGGTTGGGCAGAATTTGTTCAGCGCTATTCCATCGGTGTTGGATACCTTTTAGCTTTCAGATACGAAGGAAAGTTGAATTTCAGTGTTCACATTTTTAATTTGGCTACTGCTGAGATAAATTATCAATCACCCACACGAAGCAGCAATGAAGGATCTTACTTTGCGAATTGCCTCAAAATTTTTGAAGAAATGGAAGATGAAGACTTCACTGAATCCAAACCAGCCTTGCAGAATCTATTTAACGGGTCCAAACTTAATAGTGTAAACTGGGGTGAGGGCAGGAATGCTCTTCCTACGAAAAGTGCCAGAGATATAGGTCTTCAATTTAATGCAATTGAGTTTAAAAAATCTACTGATGAACTGAAATTGTGTGCTTCTTTCGAGGAAAAGGCCAAAAAAACTGCAAGAAAGAAGCGAAAATCTAAACCTGGCCAGGAAGCTTCTGATGAACAAAAAGAGGAGAGAGAAATGCGCATTAGATTGTATGAAAGTGCTTCTGCAAGGAAAAGAACCGTGACGGCTGAGGAAAGAGAAAAGGTTGTCAACGAAGCAAAAGCATTTGAACCAAAATTTTATCTGATGCCATGA 924 0.4416 MNLLSNHHRRCAMEQSEPRLRYWGSHCYQRRILVTAGVAVKLRLCVSDRRSSGLSFCHLRPCFHRVPPPRVPDNFLRKYGGELSSFVNLSVPEGSSWHVGLKKVDNKFWFIDGWAEFVQRYSIGVGYLLAFRYEGKLNFSVHIFNLATAEINYQSPTRSSNEGSYFANCLKIFEEMEDEDFTESKPALQNLFNGSKLNSVNWGEGRNALPTKSARDIGLQFNAIEFKKSTDELKLCASFEEKAKKTARKKRKSKPGQEASDEQKEEREMRIRLYESASARKRTVTAEEREKVVNEAKAFEPKFYLMP* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1456 307 CDD B3_DNA 70 145 IPR003340 GO:0003677
Ahy20g1456 307 PANTHER B3 DOMAIN-CONTAINING 251 302 - -
Ahy20g1456 307 ProSiteProfiles B3 DNA-binding domain profile. 71 147 IPR003340 GO:0003677
Ahy20g1456 307 MobiDBLite consensus disorder prediction 246 287 - -
Ahy20g1456 307 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 70 212 - -
Ahy20g1456 307 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 251 302 - -
Ahy20g1456 307 Pfam B3 DNA binding domain 71 145 IPR003340 GO:0003677
Ahy20g1456 307 PANTHER B3 DOMAIN-CONTAINING 70 212 - -
Ahy20g1456 307 SMART B3_2 63 147 IPR003340 GO:0003677
Ahy20g1456 307 Gene3D - 56 147 IPR015300 -
Ahy20g1456 307 MobiDBLite consensus disorder prediction 253 287 - -
Ahy20g1456 307 SUPERFAMILY DNA-binding pseudobarrel domain 64 145 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1456 Ahy-Chr20 38818420 38824388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1456 70 301 B3 DNA Binding Superfamily AT3G18990 43.644 4.66e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g1456 B3 1.80E-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1456 - - ahf:112785786 615.92