Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1406 ATGAAGTCATCAATCCACCACCTCCAACATCCTCCTCCGCAGCCGCCGCCGCCGCCGCCACTCTACGACTCCGACACCGACTCCGACGGCAGCGGAACCCACTCCTCCTCCTCCGATCTTCTCCGCCATTCCAACCTCTCCGCCTCCATCTTCAAACCCTACTTCGAGTTCACCGGCCGCCACTCCTCCTCCGCCACCACCGCCACCCCGGCCGAAGTGTCAAAGATCCAATCATTCCTTACTTCCTCATCCTCCGGCGCACTCTCATGCCTCATCTGCCTCGAACGCATCAAACCCTCAGACCCAACATGGTCCTGCTCCTCGCTCTGCTTCGCCCTCTTCCACCTCCATTGTATCCAATCATGGGCCCGCCAAGCCTCCAATCTCGCTGCCGCACGCGCCGCCACGCGCCTCCCTATCACAGAGCAGCGCGCCTCTGAAACCGCGCTCTGGAACTGCCCCAAATGCAGGGTAGAGTACCCAATCACGCACATTCCAAAAACCTACTTTTGCTTCTGCGGAAAACTCGAGAACCCTCCCAATGATCCATGGGTTTTGCCTCATTCTTGCGGTGAGATTTGTGGGAGGCCATTGAAGCACAACTGTGGTCACCATTGCCTTCTTTTATGCCACCCTGGACCCTGCCCGTCCTGCCCGAAACTCGTGAAAGTTAGTTGCTTTTGTACCAAAATTGAAGATGTGAGGAGGTGCGGGTTCAAGGAGTTCTCGTGTGGGAAAGTTTGTGGGAAGGTTCTGGATTGTGGGGTTCATGGTTGTGCTGAGATTTGTCATAAGGGTCAATGCCCTCCCTGCCGGGCACGCAGTGTGTACCAGTGCCGGTGTGGGAAGAAGAAGGAAGAAAGGGAGTGCTGTAACCGTGTTTTCAGGTGTGGCGAGCCTTGTGAGAAGAGGCTTGGATGTGGGAGGCATGTGTGTGAGAGAGGGTGCCATGTTGGGGAGTGTGGAGACTGCCCTTTGCAAGGGAAGAGGGCATGTCCTTGTGGGAAGAGAGTGTATGAAGGGATGCCTTGTGATGTTACCGTGCCCTTATGTGGGGCTACTTGTGATAAGATGCTTAGTTGTAGGTACCATAGGTGCCCCGAGAGGTGCCACCGTGGTGCATGTGTCGAGACTTGTAGGACTGTTGTGAAGAAGTCTTGTCGATGCGGCAGCCTCAGGAAAGATATTTGTGGTGTGAAAGGAAGTGCCAGAGGATGCGGGACTGTGGCCGGCATGCTTGTAAACGCAAGTGCTGTGATGGGGATTGCCCTCCATGCTCAGAGGCGGCTTAGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGGGGTGCCTGTGCTCCTTGCCCAATAATGGTCACCATTTCATGTGCATGTGGGGAAACACATTTTGAGGTTCCTTGCGGTACTGAAATGGAACAAAAACCACCCAAGTGTCCTAAACCATGCCCTATTGCTCCTTTATGCCATCATGCACCAAAGCTCAAGCCACACAAATGCCATTATGGAGCCTGTCCTCCTTGTCGGCTTCCCTGTGCAGAAGAGTACTCTTGTGGCCATGCTTGCAAATTAAGGTGTCATGATGCTAAACCTCCGCCTAATCGGGAGTTCACTCTCAAACCAAAGAAAAAGAAAATTATACAACAAAGTGAGTGTACACCTGGCACTCCATGCCCTCCTTGCCCTGAATTAGTGTGGAGACCATGTGTCGGGCAACACATTGGAGCGGAGCGAATGATGGTCTGCTCTGATAAATCACAGTTTGCCTGTGAAAACTTATGTGGAAATCCTCTACCGTGCGGTAATCATTATTGTACTAAAACCTGCCATGCCTTGGAGAATTCGGCCTCCACAAACCGGCTACAGAAAAGTGAGCCTTGTGAAGATTGTTCTCTTCCTTGTGATAAGGAAAGAGAACCTAAATGTCAGCATCGTTGCCCTCGTCGATGCCATCCTGGAGACTGCCCTCCATGCAAAGTGCTGATCAAGCGGTCTTGTCATTGTGGCTCAATGGTCCATGTGTTTGAGTGCATATATTACAACACCTTGTCAGCTAAGGATCAAGAGAAAGTCCGTTCATGTGGTGGGCTGTGTCATAGGAAGTTACCAAATTGTACCCATCTATGCCCCGAGACGTGCCATCCTGGTGAATGCCCAAATCCTGAGAAATGCAGTAAAAAGGTCACTGTTCGTTGCAAATGCCAAACACTGAAAAGGGAGTGGCCATGTCACGATGTTCAAGCAGCATATCACAGTGCTGGTTCCCACCCGAAGGATATTACCAAAAATCAATTTGGAATTGGCCTTATTCCTTGCAATTCTGATTGCAAGAGTAAAATGCAGGTTGTTGAGTCGGAATTACATCTACGGAAATCTCAAGTTACAGAGGTAAAAGAGACAGATAATGAAAAACTGGCTCCGAAGCGACGAAAAAGGCAGAAACGAGTACAAGAATCTAAGGAAGCAACAAAACTACAGAAAATTATTTCGACAACAAAGAAGCTCCTTCTGTACCTTTTTATTTTGATCATACTTGTTACTGCTACATATTATGGATACAAGGGACTTCTGTGGCTCAATGATTGGATGAATAAAGTTGATGAAAGAAGACAAAGACATCCTAGGATCAGATGA 2634 0.4992 MKSSIHHLQHPPPQPPPPPPLYDSDTDSDGSGTHSSSSDLLRHSNLSASIFKPYFEFTGRHSSSATTATPAEVSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCSSLCFALFHLHCIQSWARQASNLAAARAATRLPITEQRASETALWNCPKCRVEYPITHIPKTYFCFCGKLENPPNDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVSCFCTKIEDVRRCGFKEFSCGKVCGKVLDCGVHGCAEICHKGQCPPCRARSVYQCRCGKKKEERECCNRVFRCGEPCEKRLGCGRHVCERGCHVGECGDCPLQGKRACPCGKRVYEGMPCDVTVPLCGATCDKMLSCRYHRCPERCHRGACVETCRTVVKKSCRCGSLRKDICGVKGSARGCGTVAGMLVNASAVMGIALHAQRRLRCKNHKCPSPCHRGACAPCPIMVTISCACGETHFEVPCGTEMEQKPPKCPKPCPIAPLCHHAPKLKPHKCHYGACPPCRLPCAEEYSCGHACKLRCHDAKPPPNREFTLKPKKKKIIQQSECTPGTPCPPCPELVWRPCVGQHIGAERMMVCSDKSQFACENLCGNPLPCGNHYCTKTCHALENSASTNRLQKSEPCEDCSLPCDKEREPKCQHRCPRRCHPGDCPPCKVLIKRSCHCGSMVHVFECIYYNTLSAKDQEKVRSCGGLCHRKLPNCTHLCPETCHPGECPNPEKCSKKVTVRCKCQTLKREWPCHDVQAAYHSAGSHPKDITKNQFGIGLIPCNSDCKSKMQVVESELHLRKSQVTEVKETDNEKLAPKRRKRQKRVQESKEATKLQKIISTTKKLLLYLFILIILVTATYYGYKGLLWLNDWMNKVDERRQRHPRIR* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1406 877 MobiDBLite consensus disorder prediction 1 40 - -
Ahy20g1406 877 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 20 872 IPR034078 GO:0003700
Ahy20g1406 877 SMART znfxneu3 254 273 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 SMART znfxneu3 307 326 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 SMART znfxneu3 489 510 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 SMART znfxneu3 600 632 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 SMART znfxneu3 202 220 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 SMART znfxneu3 432 451 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 SMART znfxneu3 361 381 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 SMART znfxneu3 705 726 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 SMART znfxneu3 518 563 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 SMART znfxneu3 642 660 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 CDD NF-X1-zinc-finger 244 290 - -
Ahy20g1406 877 CDD NF-X1-zinc-finger 297 344 - -
Ahy20g1406 877 MobiDBLite consensus disorder prediction 9 23 - -
Ahy20g1406 877 CDD NF-X1-zinc-finger 351 396 - -
Ahy20g1406 877 CDD NF-X1-zinc-finger 427 470 - -
Ahy20g1406 877 CDD NF-X1-zinc-finger 630 671 - -
Ahy20g1406 877 Pfam NF-X1 type zinc finger 706 724 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 Pfam NF-X1 type zinc finger 254 272 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 Pfam NF-X1 type zinc finger 432 450 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 Pfam NF-X1 type zinc finger 518 528 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 Pfam NF-X1 type zinc finger 363 380 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 Pfam NF-X1 type zinc finger 307 325 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 Pfam NF-X1 type zinc finger 600 610 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 Pfam NF-X1 type zinc finger 499 509 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 Pfam NF-X1 type zinc finger 643 659 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 Pfam NF-X1 type zinc finger 202 219 IPR000967 GO:0005634|GO:0008270
Ahy20g1406 877 MobiDBLite consensus disorder prediction 797 818 - -
Ahy20g1406 877 SUPERFAMILY RING/U-box 88 162 - -
Ahy20g1406 877 MobiDBLite consensus disorder prediction 26 40 - -
Ahy20g1406 877 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 20 872 - -
Ahy20g1406 877 CDD NF-X1-zinc-finger 190 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1406 Ahy-Chr20 34058867 34066801 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Ahy20g1406 zf-NF-X1 0.0099 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1406 K15683 - gmx:100799540 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1406 20 34058867 34066801 Ahy20g1406 20 34058867 34066801 ECH
Ahy20g1406 20 34058867 34066801 Ahy10g1036 10 23644111 23651921 hybridization