Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1384 ATGGAGAATTATGATCATTGTTCTTTATTTCTAGACCCTTCACAAACACTGCCTCATGTCTCAGATTGTAATTCTCTTCATCGTCAATTTGGTGGTGAGTTTCATTCATGGCCGGCACCGGTCGAAGTGGTGGCCGGAGACAGAGCTGCTAGTGCTTCCAAGAGCCACAGTCAGGCCGAGAAGCGGCGCAGGGACCGGATCAATGCACAGCTTACAAGTCTAAGGAAACTAATTCCAAAATCTGATAAGATGGACAAGGCAGCTTTACTAGGAAGTGTGATAGAGCAAGTGAAGGATCTAAAGAGAAAAGCAATTGAAGTTAGCAAAGCCGTAACCGTTCCAACTGAATCCGACGAAATAACAATCGAATATGATCCGAGTGCGCGCGACGAGAGCCTAAAGATGAAGAACAAAGTTGTGATCAAGGCATCTGTTTGCTGCGACGATCGGCCGGAGCTGTTCTCGGAACTAATCCAAGTCCTAAAAGGATTAAGGCTCACGGCAGTTAGAGCTGACATAGCAAGTGTTGGGGGAAGAATCAAAGGCACATTTTTGCTTTGTTCTAAGGATAGTGAAAAGGGTGTTTGCCTTGGTACTCTCAAGCATTCACTTAAATCAGTTGTGACAAAAATTGCTTCATCTTCCATTGCAACAAATTGGCCTACTAGAAGTAAGAGGCAAAAGTTCTTCTTACCTTCTCATTTTATATAG 711 0.4388 MENYDHCSLFLDPSQTLPHVSDCNSLHRQFGGEFHSWPAPVEVVAGDRAASASKSHSQAEKRRRDRINAQLTSLRKLIPKSDKMDKAALLGSVIEQVKDLKRKAIEVSKAVTVPTESDEITIEYDPSARDESLKMKNKVVIKASVCCDDRPELFSELIQVLKGLRLTAVRADIASVGGRIKGTFLLCSKDSEKGVCLGTLKHSLKSVVTKIASSSIATNWPTRSKRQKFFLPSHFI* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1384 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Ahy20g1384 236 SMART finulus 57 106 IPR011598 GO:0046983
Ahy20g1384 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 103 IPR036638 GO:0046983
Ahy20g1384 236 CDD bHLH_AtAIG1_like 47 122 - -
Ahy20g1384 236 Pfam Helix-loop-helix DNA-binding domain 54 100 IPR011598 GO:0046983
Ahy20g1384 236 CDD ACT_UUR-ACR-like 144 186 - -
Ahy20g1384 236 Gene3D - 46 109 IPR036638 GO:0046983
Ahy20g1384 236 PANTHER TRANSCRIPTION FACTOR BHLH30 27 235 IPR045847 GO:0003700|GO:0006355
Ahy20g1384 236 PANTHER TRANSCRIPTION FACTOR BHLH51 27 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1384 Ahy-Chr20 31311200 31312453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1384 30 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 47.642 1.81e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy20g1384 HLH 5.00E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1384 - - adu:107469423 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1384 20 31311200 31312453 Ahy20g1384 20 31311200 31312453 ECH
Ahy20g1384 20 31311200 31312453 Ahy17g0905 17 10595145 10596977 PCT
Ahy20g1384 20 31311200 31312453 Ahy7g0729 7 8402921 8404805 PCT
Ahy17g0905 17 10595145 10596977 Ahy20g1384 20 31311200 31312453 PCT
Ahy7g0729 7 8402921 8404805 Ahy20g1384 20 31311200 31312453 PCT