Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1381 ATGTCAACACAACACGATTCTCGCTCTCTAAACTGGCACTACACTGAGCTAGATGACAAAGACCTTGAAATCCGTGGCAAAACACTCTTCTTCGTCATCGTTCTCTTCTCCATTATACTCCTCACCACTGTCTTCTTCCTCTACACGCGCTGGGTCTGCCGCTACAATCACCACCACCGCTCCTCCGCCGCCCACGCGCGCCACGCGCCGCAGTCATCACTTCCTTCCCAGGGTCTTGACCAGGCGTCCATAAAGAAACTTCCGATCATCCTCCATCAGGCGCCAGCGGAGCCCCACGGCGGCGCGTGGGAGGAGACGGAGTGTTGCATCTGCCTGGGCGAGTTCGTCGACGGCGAGAAGCTGAAGGTTCTTCCGGCGTGTGAACACTATTTCCATTGTGAATGCGTTGATAAGTGGCTAATGCAACATTCTAGTTGCCCGCTTTGTAGGGCTTCACTCAAAGTTGAATCTTCGTTACCAAAGATTTTGATTCAAGAACCACCCATTAGAATTGACATCCAATTTTAA 528 0.5189 MSTQHDSRSLNWHYTELDDKDLEIRGKTLFFVIVLFSIILLTTVFFLYTRWVCRYNHHHRSSAAHARHAPQSSLPSQGLDQASIKKLPIILHQAPAEPHGGAWEETECCICLGEFVDGEKLKVLPACEHYFHCECVDKWLMQHSSCPLCRASLKVESSLPKILIQEPPIRIDIQF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1381 175 SUPERFAMILY RING/U-box 103 156 - -
Ahy20g1381 175 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Ahy20g1381 175 PANTHER RING-H2 FINGER PROTEIN ATL66 3 165 - -
Ahy20g1381 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 156 IPR013083 -
Ahy20g1381 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 165 IPR044675 -
Ahy20g1381 175 CDD RING-H2_PA-TM-RING 107 150 - -
Ahy20g1381 175 SMART ring_2 108 149 IPR001841 -
Ahy20g1381 175 Pfam Ring finger domain 107 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1381 Ahy-Chr20 31213933 31220202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1381 10 158 C3H Transcription Factor Family AT3G11110 42.484 2.92e-34 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1381 - - aip:107623622 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1381 20 31213933 31220202 Ahy17g0898 17 10493852 10494983 PCT
Ahy20g1381 20 31213933 31220202 Ahy7g0725 7 8279222 8280286 PCT
Ahy17g0898 17 10493852 10494983 Ahy20g1381 20 31213933 31220202 PCT
Ahy7g0725 7 8279222 8280286 Ahy20g1381 20 31213933 31220202 PCT