Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1378 ATGGCAACAACCTCAGTGCGCGTCAAAGAAGCTGTGCTCGTCACACCTTCTGACCCCACACCAACTGGGATTCTCCACCTCTCCGCTCTCGACTCCCAACTCTTTCTTCGCTTCACCGTTGAATATCTATTTGTTTACAGGCGATCCTCTGCCCTCGACCAGCCTGCCACCGTGTCACGTATGAAGTCGGCATTGGCAAGGGCGCTCGTTCCGTACTATCCCTTTGCCGGCCGAGTTCGCTCCAGGCCGGACGTCCCCAGCCTCGAGGTAGTCTGCCGGGCACAGGGCGCACTCTTCATCGACGCCTGCTCTGATGTCTACACTGCCAATGATTTTGAGAAGGCTCCCAAAACGGTTACACAATGGAGGAAGCTCTTGTCACTCTATGTTCCCGACGTTCTCAAAGGATCGCCGCCACTCGTCGTTCAGCTCACGTGGCTTGCCGATGGAGCCGCCGCAGTTGGCGTCGGAATCAACCACGCCCTCTGCGATGGCATAGGAAGCGCTGAGTTTCTCAACTACTTCGCTAATTTAGCTTCCCAAAGGTTTGGCCCTCGCGATTCTGATCTGAAGCCCAAGCCCGTCTGGGATCGCCACATCATGAACCCGCCGTCAAAGAAGAACGAGCGGGCTAACACGTATAACCACCCTGAGTTTGCACGGGTTCCCGATCTCTGCGGGTTTTTGAACAAGGTCACCACCGGGCTCAGGCCCACCTCCATTGTGTTCAACAAGAGGCGCATCAACGAGCTCAAGGGAGTAGCCCGTTACTCGAGCGAGTCGTCATCATCGTACACGTCTTTTGAGGTGCTAGCGGCCCATGTGTGGAGGAGCTGGGCCCGAGCATTGGGCTTTCCACCAAACCAGCAACTGAAGATTCTCTTTAGCATTAACGTGCGGAACCGGGTGAAACCGAACCTTCCAGAGGGTTACTACGGGAACGCGTTCGTTCTTGGGTGCGCACAGAGCAGTGCAAAGGAGCTTGTAGAAAAAGGAATCGGGTACTGTTCGGGCCTGGTGAAACGGGCCAAGGAGAGGGTGGATGGAGAGTACGTTAGGAGGGTGAGTGAGTTGGTGTCCGAGTGGAGGGTGAGTCCTGACCCTGTTGGTGTGCTCATAGTTTCTCAGTGGTCTCGTTTGGGCCTTGAGAGGGTTGAGTTTATGGGCCGGCCCATTCATGTTGGGCCCATATGCTGGGATAGATACTGCTTGTTTCTTCCGGTGAGGGATGAGACGGAGAGTGTCAGGGTTGCCGTGGCTGTCCCTGCCGCCGCCTTTGACAGCTACCATCGCTTTATTGCAGAATCCACTTCATGA 1317 0.5566 MATTSVRVKEAVLVTPSDPTPTGILHLSALDSQLFLRFTVEYLFVYRRSSALDQPATVSRMKSALARALVPYYPFAGRVRSRPDVPSLEVVCRAQGALFIDACSDVYTANDFEKAPKTVTQWRKLLSLYVPDVLKGSPPLVVQLTWLADGAAAVGVGINHALCDGIGSAEFLNYFANLASQRFGPRDSDLKPKPVWDRHIMNPPSKKNERANTYNHPEFARVPDLCGFLNKVTTGLRPTSIVFNKRRINELKGVARYSSESSSSYTSFEVLAAHVWRSWARALGFPPNQQLKILFSINVRNRVKPNLPEGYYGNAFVLGCAQSSAKELVEKGIGYCSGLVKRAKERVDGEYVRRVSELVSEWRVSPDPVGVLIVSQWSRLGLERVEFMGRPIHVGPICWDRYCLFLPVRDETESVRVAVAVPAAAFDSYHRFIAESTS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1378 438 Pfam Transferase family 5 426 - -
Ahy20g1378 438 Gene3D - 1 221 IPR023213 -
Ahy20g1378 438 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 7 432 - -
Ahy20g1378 438 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 7 432 - -
Ahy20g1378 438 Gene3D - 231 432 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1378 Ahy-Chr20 30862215 30864174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1378 6 435 Monolignol Biosynthesis Gene Families AT5G48930 29.039 5.08e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1378 - - gmx:100803812 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1378 20 30862215 30864174 Ahy20g1378 20 30862215 30864174 ECH
Ahy20g1378 20 30862215 30864174 Ahy10g0979 10 18922893 18924850 hybridization
Ahy20g1378 20 30862215 30864174 Ahy17g0894 17 10411970 10414493 PCT
Ahy20g1378 20 30862215 30864174 Ahy7g0719 7 8189141 8191588 PCT
Ahy17g0894 17 10411970 10414493 Ahy20g1378 20 30862215 30864174 PCT
Ahy7g0719 7 8189141 8191588 Ahy20g1378 20 30862215 30864174 PCT