Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1350 ATGGGAAGTGGAAACTCGCCATGTGCTTCATGCAAGCTTCTTAGACGGAGGTGTGCCAAGGATTGCATCTTCGCACCTTATTTCCCTTCCGATGACCCTCAAAAGTTCGCCATTGTTCACAAGGTCTTTGGTGCTAGCAACGTTAGCAAAATGTTACAGGAGCTTCCGATTCATCAAAGAGCAGATGCAGTGAGTAGCTTGGTATACGAAGCGAACGCAAGGGTTCGTGACCCGGTGTATGGATGCGTGGGAGCCATATCATACCTTCAGAACCAAGTCTCAGAGCTTCAAATGCAGCTTGCTGTTGCGCAAGCAGAGATACTCTGCATCCAGATGCAGCATGAACCCTCTGTAGCCGCAGCAATACCCAATCCACAACAAATAATGGAGTTTCAAGAACAGAACAATAATAATAATGAACTCACTCACCATCACCATCACCACCATCAGTACCTTAACTTTGCAGCTTCTTCTAGCAATGTAATCCATGATTCTCTCTCTAGAGAGACTTTGTTTGGACATGACATGGTTTCTTAA 537 0.4544 MGSGNSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPSVAAAIPNPQQIMEFQEQNNNNNELTHHHHHHHQYLNFAASSSNVIHDSLSRETLFGHDMVS* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1350 178 Coils Coil 86 106 - -
Ahy20g1350 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 158 - -
Ahy20g1350 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 158 - -
Ahy20g1350 178 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Ahy20g1350 178 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1350 Ahy-Chr20 29281714 29282762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1350 2 118 AS2 family AT2G30130 90.598 2.22e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy20g1350 LOB 1.50E-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1350 - - zju:107413913 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1350 20 29281714 29282762 Ahy17g0873 17 10077957 10079237 PCT
Ahy20g1350 20 29281714 29282762 Ahy7g0701 7 8016109 8017498 PCT
Ahy17g0873 17 10077957 10079237 Ahy20g1350 20 29281714 29282762 PCT
Ahy7g0701 7 8016109 8017498 Ahy20g1350 20 29281714 29282762 PCT