Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1322 ATGATCATATATTTTAAGGAAAACCAACGTTTGGTTTTGAAGAGAGGCCCCACTTTAGACATTCGGATAAAGTCAAGAAAAGCCACTTCATCAGATTGTTCTTCTTTTCTACGGTCTGGTGTTGATATATGTGTTCTTTCAACTCCACAATGCACTGCTAATAATAATAATGATCCTGTGTGGATTGATGGTAGAATAAATTCCATAAAGAGAAACCCCCATGGTTCTGATTGTTCATGTCAATATTATGTCAACTTCTATCTTAACCAAGGTTCATTTGGTACACAAAGAACACTTAACAAGGAAGTTGAAGTAATTGCATTGAATCAAATTTCAATCCTCCAGAAGATTGACCATAATAGTTTCTCTAAAGATAACTCTTCTAGGTGGGATTCATCAATGGACTGCTCCTCAGTACCCCAAAGTAAATTACTCTTGGGGAAATTCTTATCGGATATTTCATGGCTGGTTATTGCATCTTTTTTAAAGAAGGCTAAATTTGATGTAAGATCTGTGGATAACAAGATTGTGTATCAAGTTTTGGGAGGTAGTAATGCTAATGATTCTTACATAGATGTTGTGAATTTCAAAGTAGATGATGATGGCATTGTGCAATCCATGGTCTCTCAAATTGATACACATGATGCTATTAAAAGAATTGGTCATAAAAGATGTTATGATTATTACCCTGAAGATGAGAAAGCAGATCCATCCTGTAATGTTGAGGGATTAAGGCGTTCGAAGCGAAGGCATGTACAACCGGACCGGTACCTTGGTTGTGAGGTTCCTGTGATGGATGTTAGTACTCTTAGAACCTGGCCTCCCAAGATGAGTGTATCGAAAGATGAAGGCAAAGACGAAGACAAAGAAGAAGAGCCTGTTCCATTAGCATGGGAGCCTTGCTTCCAAGAAAAGTGTAATAAACAAGATGTTAACAGTGGCAAGAAAATTGTAACGTACCAAAGAAGGAAGAAAAGAATGGAAGGGAAGTTAGGTGATGCAGATCAAGATGGAATTCAACCTCCAATTTTTGTTCTTCCTCCTCCCAAGAAAGATGAACCAATTCCACTTCCCCAGAACCGTTATAATCTCAGAGACAGGCAAAACACGCAAAAAACCGGGAACGAAGAAAACGGGGAAGAACTTTCTTCAAGAATCTATAGTGGTTATGGCGCCGCAAAGTTACACAAGAAGAAATCGGTTGATCTAGAAGATATAGACAAGGAACTTGGGTGGGAAGGTTTAAGTTCGAAAAGAAGAGTTCAAGAGAAAAGAAACCACCATTCAAGTTCAACAACATATACAAAAAGTAGTAGGAATCTTGATGATGAAGAGAGACCTTACAAAGACAGAACCTTAAACGCAGTTTCATACAAGGAAGTCATAGATTCATATCTGAGGCAAATTGAAGAGGTTTCTAATGTTGAAAAAGAGCAACCAAGTATAAGGGAGCAGTGGATGGCTACAACAAGAGAATGTGAACAAAAGAATGAGATGGGAAAATCTCAAGTGGAGGAAGAAGAAATTTCTGAAACGGCTATGTTGTGGAGAGAAATGGAAATGTCAATGGCATCAAGTCATCTTGTTGAAGAAACAAAGGATTCAAGTTCAGATGCAGTTCTTGCTGAAACTATAGGAAACTGCAACAAAGTTTGCCAACATGATTATAGATCGGATGATGAAATTGGAATTTACTGCATTAGATGCGGTGTTGTTAGGGTCGACATCAAAGACGTCGCAACAGAATTTTTGCCACAGAAAACAAGGCACAGGCAAGAGGAGAATCAACGGAGTGATTCAGAGAAGCTGGAGGCTGAGGAAGACGCCGGGGACACCAAGTTTTTCTCAACCGTTGATGCTTCTAGAGATGAACCTATGAATGAAGAAAATGGCAATGTTTGGGAACTAGTTCCAGATTTGAAAGTAAAAATGCATGTCCACCAAAGAAAAGCATTTGAGTTTCTTTGGCGAAACATTGCAGGGTCAATGGAACCATTACAAATGGAGTCACAATCCAAAAGCATTGGTGGTTGTGTGATATCTCATTCTCCGGGAGCTGGAAAAACCTTCCTCATAATCGCGTTTCTTGTCAGTTATCTGAAGCTTTTCCCAGGGAAAAGGCCACTGATTCTTGCTCCAAAAACTACACTCTACACATGGTACAAGGAGTTCATCAAATGGGAGATTCCTTTACCGATTTATATTATCCATGGCCGCTCGTCGCAGAAGAAGTTCAAGGAGAATACCGTGTCCATTCCTGGCATTCCAAAGCCAACGAATGATGTAAAGCATGTTCTTGACTGTCTAACAAAGATTCACAAATGGCATGAGCATCCCAGTGTCCTAATCATGGGCTATACTTCGTTTCTTTCGCATATGCGCGAAGATTCCAGATTCTCTCACGGAAAGTATATGGCAAAAGTCTTGAGAGAAAGACCTGGGATCTTGGTTCTCGACGAAGGGCACAATCCTCGAAGCACGAAATCGAGGTTGAGGAAAGTTTTGATGAAGGTAAATACAGAGCTCAGAGTTTTGCTCTCTGGAACCTTGTTTCAGAACAATTTCTGCGAGTTTTTCAACACGTTGTGCTTGGCCAGGCCCAAGTTTGTTCACGAAGCTTTATCAGAGTTAGATGGTAAATACCGGACGAATCAAAAGATTGCTGAGAAAGCAAGACATTTGCTCGAGGCACGGGCGAGGAAATTCTTCCTGGACCAGATTGCCAAGAGAATAAACTCGAGCGATGACGAAGACACGGAACAGGGTCTGAATTTGTTGAAGAAACTAACAAATGAATTCATTGATGTGTATGATGTTGGCAACTCTAATATTACTATGCCTGGTTTACAGATCTATACATTGGTGATGAACACAACTGATATACAGTTCAAGATTCTGTTTGAACTGCACCAGAAAATGGGTGAGTGCCATGGTTACCCTCTGGAGTTAGAGCTTCTTATAACACTTGGATCAATCCATCCATGGCTGGTGAAAACGGTGGCGTGCGTAGCTAAGTTCTTGAGTGTGGAGCGATTGAGGGAGTTAGATGAAGTCAGGAATGATTTAAAGAAAGGCTCTAAGGTGAGATTTGTTCTTAGCCTCATAAGCCGCGTTTTCGCGAAGGAGAAGATCTTGATCTTCTGCCACAACATTGCACCAGTGAAGCTGCTTGTGGAATTGTTTGAGAGAGTTTTTAATTGGAGAAAAGACAGAGAGATCTTGGTACTCAACGGGGAACTTGAACTGTTCGAACGCGGGAAAGTCATCGATAAGTTCGAGGATCCTCATGGTGTTTCGAGGGTGCTTCTTGCCTCAATCACGGCCTGCGGAGAAGGGATTAGTCTAACTGCGGCTTCTAGAGTGATCATGTTGGATTCGGAATGGAATCCTTCCAAGACGAAGCAAGCGATTGCGAGGGCTTTCAGACCAGGGCAGCAGAAAACGGTTTATGTGTATCAGTTACTAACTTCAGATTCATTGGAGGTAGATAAGCATAGGAGAAACAAATGGAAAGAGCGGGTTTCTTGCATGATATTCCACGAGGAATCTGCGGAGGCTCCTTCGCAGTGGCTAGCCGAGAATATTGAGGATGATGTGCTTAGAGATATGGTTGAGGAGGACAAGTCTAAATCATTCCATATGATCATAAAGAATGACAAGTATTCAGCAACAATTGATGGTTAA 3684 0.4099 MIIYFKENQRLVLKRGPTLDIRIKSRKATSSDCSSFLRSGVDICVLSTPQCTANNNNDPVWIDGRINSIKRNPHGSDCSCQYYVNFYLNQGSFGTQRTLNKEVEVIALNQISILQKIDHNSFSKDNSSRWDSSMDCSSVPQSKLLLGKFLSDISWLVIASFLKKAKFDVRSVDNKIVYQVLGGSNANDSYIDVVNFKVDDDGIVQSMVSQIDTHDAIKRIGHKRCYDYYPEDEKADPSCNVEGLRRSKRRHVQPDRYLGCEVPVMDVSTLRTWPPKMSVSKDEGKDEDKEEEPVPLAWEPCFQEKCNKQDVNSGKKIVTYQRRKKRMEGKLGDADQDGIQPPIFVLPPPKKDEPIPLPQNRYNLRDRQNTQKTGNEENGEELSSRIYSGYGAAKLHKKKSVDLEDIDKELGWEGLSSKRRVQEKRNHHSSSTTYTKSSRNLDDEERPYKDRTLNAVSYKEVIDSYLRQIEEVSNVEKEQPSIREQWMATTRECEQKNEMGKSQVEEEEISETAMLWREMEMSMASSHLVEETKDSSSDAVLAETIGNCNKVCQHDYRSDDEIGIYCIRCGVVRVDIKDVATEFLPQKTRHRQEENQRSDSEKLEAEEDAGDTKFFSTVDASRDEPMNEENGNVWELVPDLKVKMHVHQRKAFEFLWRNIAGSMEPLQMESQSKSIGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLILAPKTTLYTWYKEFIKWEIPLPIYIIHGRSSQKKFKENTVSIPGIPKPTNDVKHVLDCLTKIHKWHEHPSVLIMGYTSFLSHMREDSRFSHGKYMAKVLRERPGILVLDEGHNPRSTKSRLRKVLMKVNTELRVLLSGTLFQNNFCEFFNTLCLARPKFVHEALSELDGKYRTNQKIAEKARHLLEARARKFFLDQIAKRINSSDDEDTEQGLNLLKKLTNEFIDVYDVGNSNITMPGLQIYTLVMNTTDIQFKILFELHQKMGECHGYPLELELLITLGSIHPWLVKTVACVAKFLSVERLRELDEVRNDLKKGSKVRFVLSLISRVFAKEKILIFCHNIAPVKLLVELFERVFNWRKDREILVLNGELELFERGKVIDKFEDPHGVSRVLLASITACGEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKTVYVYQLLTSDSLEVDKHRRNKWKERVSCMIFHEESAEAPSQWLAENIEDDVLRDMVEEDKSKSFHMIIKNDKYSATIDG* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1322 1227 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 1221 IPR044567 GO:0080188
Ahy20g1322 1227 MobiDBLite consensus disorder prediction 328 383 - -
Ahy20g1322 1227 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 2 1221 - -
Ahy20g1322 1227 MobiDBLite consensus disorder prediction 275 294 - -
Ahy20g1322 1227 Pfam Helicase conserved C-terminal domain 1027 1143 IPR001650 -
Ahy20g1322 1227 CDD SF2_C_SNF 1026 1155 - -
Ahy20g1322 1227 SMART helicmild6 1059 1144 IPR001650 -
Ahy20g1322 1227 MobiDBLite consensus disorder prediction 278 294 - -
Ahy20g1322 1227 MobiDBLite consensus disorder prediction 362 382 - -
Ahy20g1322 1227 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1030 1185 IPR001650 -
Ahy20g1322 1227 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 669 868 IPR014001 -
Ahy20g1322 1227 SMART ultradead3 640 882 IPR014001 -
Ahy20g1322 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 812 1182 IPR027417 -
Ahy20g1322 1227 MobiDBLite consensus disorder prediction 587 609 - -
Ahy20g1322 1227 Gene3D - 1003 1218 IPR027417 -
Ahy20g1322 1227 Gene3D - 615 911 IPR038718 -
Ahy20g1322 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 870 IPR027417 -
Ahy20g1322 1227 CDD DEXHc_ATRX-like 644 872 - -
Ahy20g1322 1227 Pfam SNF2-related domain 646 904 IPR000330 GO:0005524|GO:0140658
Ahy20g1322 1227 MobiDBLite consensus disorder prediction 419 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1322 Ahy-Chr20 27438843 27444471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1322 1015 1174 RAD5 or RAD16-like Gene Family AT5G43530 32.927 9.05e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy20g1322 SNF2_N 1.60E-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1322 K10875 - gmx:100811703 1320.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1322 20 27438843 27444471 Ahy20g1322 20 27438843 27444471 ECH
Ahy20g1322 20 27438843 27444471 Ahy17g0866 17 9973489 9979886 PCT
Ahy20g1322 20 27438843 27444471 Ahy7g0694 7 7877450 7883881 PCT
Ahy17g0866 17 9973489 9979886 Ahy20g1322 20 27438843 27444471 PCT
Ahy7g0694 7 7877450 7883881 Ahy20g1322 20 27438843 27444471 PCT