Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1313 ATGCAGAACCAGAACCAGATTTTGCAACATGTGATGAGAAAGAACAACCACATATCTGAAAACAAGAAAGAAAGATGGAAGACTATTGTGTTCTTCAATGTTCACTCTTTCTGGATTCTTCTTCTTATGCTGCTGCTGCTGCTGCTTCATTCCACAGTTATGAATCCAGTTTCATGTGAAGATGATCGCTGGGATGGAGTGGTCGTAACAGAATCGAATTTCCTAGCACTTCGAGCCTTCAAGGAAGAGCTCATTGATCCAAAAGGATTCTTGAGAAGTTGGAACGACACCGGCTACGGTGCATGTTCCGGAAGCTGGAATGGCATAAAGTGTGCAAAGGGACAAGTTATAGTAATCCAGCTTCCATGGAAGGGATTGCGCGGCCGAATAACGGAACGGATTGGACAGCTTCAGGGTCTCCGGAAGCTTAGTCTTCACGATAACCGAATCGGCGGCGCAATCCCTTCGTCCTTGGGGATTCTCCCAAGCCTCAGAGGTATTCAGTTATTTAACAATATGTTAACAGGTTCAATCCCTCTTTCAATTGGTTACTGCCCTTTGCTTCAGTCTCTTGACTTAAGCAACAATTTTCTCACTGGAACAATCCCTGATAGCATTGCCAATTCCACAAAGATTTATTCTCTTAACCTTAGCTTCAATTCCTTCCATGGTTCCATTCCAATTAGCCTGACTCGCTCGCGTTCGCTGACGTTTCTTTCGCTTCAGCACAATAACCTCTCTGGATCCTTGCCTAATTCATGGGGTGGTGATGGTAGCATGAATAATGGCCCCTTCTTTAGGCTTCAAAGTTTGATTCTTGATCATAACTTTTTCACTGGCATTGTTCCTTCTTCTTTGGGAAGACTAAGAGAACTGAATGAGATTTCCCTTGGTCATAATCGGTTTATTGGAGCTATACCAAATGAATTAGGAACACTTTCTAGGCTCGAATCGTTTGACTTTTCGAATAATGAACTTAATGGAAGCTTGCCTGCTACACTCTCTAATTTATCCTCACTAAAACTATTGAATTTAGATAACAACCATCTTGGTAACCAAATACCAGAAGCTTTAGGGAAACTGCATAATCTTTCTGTTCTGATTCTGAGTAGGAACAAGTTTAGTGGTCATGTTCCTGCAAGTATTGGAAACATTTCGGCGCTTTCACAGCTCGATTTGTCAATGAATAATCTCAGCGGAGAAATTCCATTATCTCTTGGGACACAAGTTAGTCTTAAGTTCTTCAATGTGTCTTACAACAATCTCTCAGGTCCCGTTCCAACTATGCTTGCTAAGAAATTTAACTCAAGTTCCTTTGTGGGAAACAATCAATTATGTGGCTATAGCCTTTCATCTCCATGTCTTGCACCTGCTCCATCAGATGAAGTTCTAGCACCGTTTCCACATCAAGAGTCAAAAGATTGCCATCATAGGAAACTAGGTACCAAAGACAAGATTCTCATAGCAGCAGGGGCACTGCTCTTAGTCCTCATTACACTATGCTGCATCCTGCTCTTCTGCTTGATCAGAAAGAGGGCGAATTCTACGGCAGATAATGGAAAGGCCACAAGCAGAACTGCTGGTACGACTAGGACAGAAAGAGGAGTCGGGCCGCCTGTTTCTTCTGGTGAAGTGGAAGAGGGCGGTGATGCTGGAGGGAAGCTAGTCCATTTTGATGGACCAATTAAGTTTACAGCTGACGATCTCTTGTGCGCAACGGCAGAAATAATGGGAAAGAGCACCTATGGAACTGTGTACAAGGCTACAATGGAGGATGGAAGGCAAGTTGCAGTGAAGAGATTGAGAGAAAAGATCACAAAGAGTCAGAGAGAATTTGAATCAGAAGTTTGTGTTCTTGGGAGAATTAGACATCCCAATCTTTTGGCTCTAAGGGCCTATTACTTGGGACAAAAAGGGGAAAAGCTCCTTGTTTTTGATTACATGCCTAGAGGAAGCCTTGCTTCTTTCCTACATGTTCTTAGACCTGAAACATACATTGATTGGCCAACAAGGATGAAAATTGCGCAGGGAATTGCGCGTGGCTTGTTTTACCTTCATTCGAAGGCAAACATCATACATGGAAACCTTACATCCAGCAATGTGCTGCTTGATGAGAACACAGATGCTAAGATAGCAGATTTTGGCCTTTCTAGGTTGATGACAGCTGCTGCTAATTCCAATGTGATAGCTACGGCTGCAGCACTAGGATATCGCGCGCCTGAGCTCTCGAAACTCAAGAAGGCTAACACAAAATCTGATATATACAGCTATGGTGTGATCTTGCTGGAAATCTTGACAGGAAAGTCACCTGGTGAAACTAGGAATGGCTTGGATTTGCCTCAGTGGGTTGCTTCTATTGTCAAAGAAGAGTGGACAAATGAGGTTTTCGATTCGGATTTGATGAGGGACAAGGCATCATCCTCAACAGTTAATGATGAGTTGCTTAACACCTTGAAGCTTGCTTTGCACTGCGTTGATCCTACACCGTCACCACGGCCGGAAGCTCACCAAATTCTCCAGCAGCTAGAAGAGATTAGACCAGAGTTACCACCAGTTAGCCCTGGAGAAGAGTCTTGGCATCATGTTTAG 2589 0.4345 MQNQNQILQHVMRKNNHISENKKERWKTIVFFNVHSFWILLLMLLLLLLHSTVMNPVSCEDDRWDGVVVTESNFLALRAFKEELIDPKGFLRSWNDTGYGACSGSWNGIKCAKGQVIVIQLPWKGLRGRITERIGQLQGLRKLSLHDNRIGGAIPSSLGILPSLRGIQLFNNMLTGSIPLSIGYCPLLQSLDLSNNFLTGTIPDSIANSTKIYSLNLSFNSFHGSIPISLTRSRSLTFLSLQHNNLSGSLPNSWGGDGSMNNGPFFRLQSLILDHNFFTGIVPSSLGRLRELNEISLGHNRFIGAIPNELGTLSRLESFDFSNNELNGSLPATLSNLSSLKLLNLDNNHLGNQIPEALGKLHNLSVLILSRNKFSGHVPASIGNISALSQLDLSMNNLSGEIPLSLGTQVSLKFFNVSYNNLSGPVPTMLAKKFNSSSFVGNNQLCGYSLSSPCLAPAPSDEVLAPFPHQESKDCHHRKLGTKDKILIAAGALLLVLITLCCILLFCLIRKRANSTADNGKATSRTAGTTRTERGVGPPVSSGEVEEGGDAGGKLVHFDGPIKFTADDLLCATAEIMGKSTYGTVYKATMEDGRQVAVKRLREKITKSQREFESEVCVLGRIRHPNLLALRAYYLGQKGEKLLVFDYMPRGSLASFLHVLRPETYIDWPTRMKIAQGIARGLFYLHSKANIIHGNLTSSNVLLDENTDAKIADFGLSRLMTAAANSNVIATAAALGYRAPELSKLKKANTKSDIYSYGVILLEILTGKSPGETRNGLDLPQWVASIVKEEWTNEVFDSDLMRDKASSSTVNDELLNTLKLALHCVDPTPSPRPEAHQILQQLEEIRPELPPVSPGEESWHHV* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1313 862 Pfam Protein tyrosine and serine/threonine kinase 574 842 IPR001245 GO:0004672|GO:0006468
Ahy20g1313 862 Pfam Leucine rich repeat 267 326 IPR001611 GO:0005515
Ahy20g1313 862 MobiDBLite consensus disorder prediction 518 549 - -
Ahy20g1313 862 Gene3D Ribonuclease Inhibitor 185 263 IPR032675 -
Ahy20g1313 862 Gene3D Ribonuclease Inhibitor 264 460 IPR032675 -
Ahy20g1313 862 Gene3D Phosphorylase Kinase; domain 1 577 648 - -
Ahy20g1313 862 SMART LRR_typ_2 361 385 IPR003591 -
Ahy20g1313 862 SMART LRR_typ_2 337 360 IPR003591 -
Ahy20g1313 862 SMART LRR_typ_2 137 161 IPR003591 -
Ahy20g1313 862 SMART LRR_typ_2 234 256 IPR003591 -
Ahy20g1313 862 SMART LRR_typ_2 313 336 IPR003591 -
Ahy20g1313 862 SMART LRR_typ_2 265 288 IPR003591 -
Ahy20g1313 862 Pfam Leucine Rich Repeat 188 207 IPR001611 GO:0005515
Ahy20g1313 862 Gene3D Transferase(Phosphotransferase) domain 1 649 850 - -
Ahy20g1313 862 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 7 854 - -
Ahy20g1313 862 Gene3D Ribonuclease Inhibitor 72 184 IPR032675 -
Ahy20g1313 862 Pfam Leucine rich repeat N-terminal domain 75 111 IPR013210 -
Ahy20g1313 862 ProSiteProfiles Protein kinase domain profile. 571 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g1313 862 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 7 854 - -
Ahy20g1313 862 SUPERFAMILY Protein kinase-like (PK-like) 575 851 IPR011009 -
Ahy20g1313 862 SUPERFAMILY L domain-like 110 452 - -
Ahy20g1313 862 CDD STKc_IRAK 577 845 - -
Ahy20g1313 862 PRINTS Leucine-rich repeat signature 337 350 - -
Ahy20g1313 862 PRINTS Leucine-rich repeat signature 188 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1313 Ahy-Chr20 27141863 27144976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1313 64 847 Receptor kinase-like Gene Family AT3G51740 62.643 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ahy20g1313 PK_Tyr_Ser-Thr 2.10E-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1313 - - aprc:113851294 1196.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0859 17 9873477 9876660 Ahy20g1313 20 27141863 27144976 ECH
Ahy20g1313 20 27141863 27144976 Ahy20g1313 20 27141863 27144976 ECH
Ahy20g1313 20 27141863 27144976 Ahy10g0972 10 18194145 18197252 hybridization
Ahy20g1313 20 27141863 27144976 Ahy17g0859 17 9873477 9876660 PCT
Ahy20g1313 20 27141863 27144976 Ahy7g0687 7 7759072 7762178 PCT
Ahy17g0859 17 9873477 9876660 Ahy20g1313 20 27141863 27144976 PCT
Ahy7g0687 7 7759072 7762178 Ahy20g1313 20 27141863 27144976 PCT