Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1270 ATGGTTTCTAGAGAGCAAAAGAGAGCAGCACTATTGCACGAGAAGCTGCAACTTCTTCGTTCCATTACTAACTCTCATGCTCTTAACAAGACGTCGATTATAATCGATGCATCAAAGTACATCAGAGATCTAAAGCAAAAAGTAGAAAGACTCAATCAAGACATGGCGGCTGCACAAACATCCACTCACCAAAATCCTTTGCCTATGGTAAAAGTAGAAACCCTAGAGAAGGGGTTTCTTGTAAACGTGGTGTCAGCAAAGAGTTGTCCAGGTCTTCTTGTTTCCATATTGGAGGTGTTTGAAGAGATGGGTCTCACTGTTATGGAAGCTAGGGTTTCTTGCACAGACACTTTTCGCTTTCAAGCTGTTGGAGGAGAAAATGAAGGGGATGGTGAGAGTATTATTGATGCACAAGCTGTGAAACTAGCAGTGGGGCAAGCAATCAAGAATTGGAGCCAACAAAGTACTGATGATGATGATGATGATGATGATCAACAGTGA 501 0.4212 MVSREQKRAALLHEKLQLLRSITNSHALNKTSIIIDASKYIRDLKQKVERLNQDMAAAQTSTHQNPLPMVKVETLEKGFLVNVVSAKSCPGLLVSILEVFEEMGLTVMEARVSCTDTFRFQAVGGENEGDGESIIDAQAVKLAVGQAIKNWSQQSTDDDDDDDDQQ* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1270 166 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 157 - -
Ahy20g1270 166 Gene3D - 2 67 IPR036638 GO:0046983
Ahy20g1270 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 66 IPR036638 GO:0046983
Ahy20g1270 166 CDD ACT_UUR-ACR-like 90 148 - -
Ahy20g1270 166 Coils Coil 34 61 - -
Ahy20g1270 166 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1270 Ahy-Chr20 25048165 25050837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1270 5 144 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.289 2.66e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1270 - - tcc:18600910 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1350 17 22793128 22797203 Ahy20g1270 20 25048165 25050837 ECH
Ahy14g2082 14 117828546 117832382 Ahy20g1270 20 25048165 25050837 ECH
Ahy12g2186 12 107893135 107896036 Ahy20g1270 20 25048165 25050837 ECH
Ahy11g0297 11 3323198 3326553 Ahy20g1270 20 25048165 25050837 ECH
Ahy20g1270 20 25048165 25050837 Ahy20g1270 20 25048165 25050837 ECH
Ahy20g1270 20 25048165 25050837 Ahy10g0934 10 16919482 16922122 hybridization
Ahy20g1270 20 25048165 25050837 Ahy17g0842 17 9725898 9727955 PCT
Ahy20g1270 20 25048165 25050837 Ahy7g0670 7 7615736 7617626 PCT
Ahy17g0842 17 9725898 9727955 Ahy20g1270 20 25048165 25050837 PCT
Ahy7g0670 7 7615736 7617626 Ahy20g1270 20 25048165 25050837 PCT