Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1256 ATGAAGGCACCTATTGAGATGGTTGTCCTTGATAAAGAGGGAGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATCTTCGAGGGCTTACTCGCTGAGAGCAACGTGTACGTGGTCACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGGATCCATTTCAAGAGGGACACGATTGTGCGTCCGGTACAAGATTCTTCAGTTTCATTGAACGGATTTAATTTTGTTCCGTTCAAAACAATTCAATCAAAGTCTAAAGAAGATGGTTATTTAGTTAGGGTCATGGGTGTATCTAACACAAACTACAATTCGAAACTGTTTATCAATGTTGAGTTTCCAGCTGCCAGGGATTTCTTTGCGAGGGTGAACAAATTGGATCCTGTTGACGGACAAGGCATAATGCCGCTGGTCTGTGGTCAACCTGTTTCAGATGAGGAGGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCAGAGATAAAGGAGCATAATCAGGATGCTGTATTTGTTACAGTCGGGACGATTAAAGAAGTTGAGACTGAATTTGGTTGGGGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTGAAGGAACTTGATAAAAAATATTTCTGTCCCAATTGCATTAGAGACTACGGGTTTTATGAGCCAAGGTACATCATCCACATAAGGGTGATAGACCACACCGATGCTGCCTCTTTTGTTTTGTTCGATGGAGAAGCTGCAAAGTTTCTTGGAGTTTCTACTAAGGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTAATAAGCTTAGGGATATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGGAATCTGAACTCTTATGAACCATATGTGATTCATGTGCTGAGAATGACAAATGAGAATTCTCTGGTCTCTGCCTTCCTGGATAAATACAATCCTGACACTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCATACAACACTTCTAAGGCTTGTGAGAGTGAGCCAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCAGAGCTAAGAAACATATTGAAGAGATTGGAGATGAGTCAGTTTCATCCAAATCTAAGAAAGGGAAGTGGGTTGTGGTGGAGGACTAA 1206 0.4063 MKAPIEMVVLDKEGDTIQCTVKDIFVPIFEGLLAESNVYVVTNFGVALNTIKFKPTRHEFRIHFKRDTIVRPVQDSSVSLNGFNFVPFKTIQSKSKEDGYLVRVMGVSNTNYNSKLFINVEFPAARDFFARVNKLDPVDGQGIMPLVCGQPVSDEEDFLRLSVYKTIAEIKEHNQDAVFVTVGTIKEVETEFGWGYKGCKKCRRGLKELDKKYFCPNCIRDYGFYEPRYIIHIRVIDHTDAASFVLFDGEAAKFLGVSTKDLRQSCVTKGVEKNSCPEEINKLRDIKFIFKVQLKMRNLNSYEPYVIHVLRMTNENSLVSAFLDKYNPDTGLLSHENSELLSLSTGPYNTSKACESEPTPSPAVDEKHNSKILRAKKHIEEIGDESVSSKSKKGKWVVVED* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1256 401 SUPERFAMILY Nucleic acid-binding proteins 164 313 IPR012340 -
Ahy20g1256 401 CDD RPA1_DBD_A_like 5 70 - -
Ahy20g1256 401 Gene3D - 2 76 IPR012340 -
Ahy20g1256 401 PANTHER REPLICATION FACTOR A 1, RFA1 156 325 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy20g1256 401 PANTHER REPLICATION FACTOR A 1, RFA1 11 94 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy20g1256 401 CDD RPA1_DBD_C 167 300 IPR013955 -
Ahy20g1256 401 SUPERFAMILY Nucleic acid-binding proteins 5 76 IPR012340 -
Ahy20g1256 401 Pfam Domain of unknown function DUF223 6 96 IPR003871 -
Ahy20g1256 401 PANTHER BNAC07G49340D PROTEIN 11 94 - -
Ahy20g1256 401 MobiDBLite consensus disorder prediction 349 369 - -
Ahy20g1256 401 Gene3D - 156 325 IPR012340 -
Ahy20g1256 401 Pfam Replication factor-A C terminal domain 179 302 IPR013955 -
Ahy20g1256 401 PANTHER BNAC07G49340D PROTEIN 156 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1256 Ahy-Chr20 24578893 24584551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1256 179 264 Core DNA Replication Machinery Family AT5G61000 32.184 8.42e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1256 - - adu:107477146 583.563