Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1246 ATGGTGGAGCAGTTGCTTGGTGCCAGGCCTCCGGTGGCGGCACAGCAAGCTGCGCAGAGGAAGAAGTCCTTCACACTGAAGCTAGTGTGGTTGCGTGATCGTGGCACGGCACAATTATTTCTTACTACATTTCGAATGGATCTTGAGAGTCTTGATAGTAATGAGCCAGGCTGGACTAGACCTCTTCGTCTTCTCCAAGAGCTTATTCCCATGGCGGCTATGAATGAAATAAATTTGTATTCTTGTAAAAATGATGACATGCTTTTAAAATATTCATACGCCATGCTGGCTTCTTTTGGGAAGAAGGCTTCTATTGGTCCAAAATTCTGGAACCATGCTGCCGCCACCAACCCCAACAACAAGGTTCAGTCACCACTTCCTGAGATCCCAGGAGATAACAACAACAAAGTGGCAGCATGTGACGAGGTACTAGGAATGGAAAAAATGGTGGTTGGTGGTGCAGAAGATAAGAAGCAGCCCGAGAGGAAACTTAAGAACGTGTACAGGGGAATCAGGCGCAGGCCCTGGGGAAAGTGGGCCGCGGAGAAAAGGGATCCACACAAAGGGGCCCGTGTCTGGCTCGGCACTTTCAACACTGCCGAGGAGGCTGCTAGGGCCTACGACATCGCTGCTATACACATCCGAGGAAACAAAGCCAAGCTCAATTTTCCGAATACTATCAAGGACAACGGCGTCGAAGTCCTTCCATTGGCTAAGAAACCATGCCTTAGCGATGAGACCCAATTTCCCATGTTAACACCTCTCTCTGCCACGTTTGACAGTGATGATGGAAGCATGGAGGGATGGGAATTCAACCTGACACAGCAGATGTCGGGTCTTGAATGGCTCCTTGGATTGGAGAATGAGCAACCATCCCAAATGGGGGGTGATGATGTCTTTTCGAACAACCTTAACAACAACAATGATAGCACGCCAAAAACAATAACAACATGGACCTGTGGATGCTAG 969 0.4871 MVEQLLGARPPVAAQQAAQRKKSFTLKLVWLRDRGTAQLFLTTFRMDLESLDSNEPGWTRPLRLLQELIPMAAMNEINLYSCKNDDMLLKYSYAMLASFGKKASIGPKFWNHAAATNPNNKVQSPLPEIPGDNNNKVAACDEVLGMEKMVVGGAEDKKQPERKLKNVYRGIRRRPWGKWAAEKRDPHKGARVWLGTFNTAEEAARAYDIAAIHIRGNKAKLNFPNTIKDNGVEVLPLAKKPCLSDETQFPMLTPLSATFDSDDGSMEGWEFNLTQQMSGLEWLLGLENEQPSQMGGDDVFSNNLNNNNDSTPKTITTWTCGC* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1246 322 CDD AP2 168 226 IPR001471 GO:0003700|GO:0006355
Ahy20g1246 322 PANTHER EREBP TRANSCRIPTION FACTOR 154 231 - -
Ahy20g1246 322 Gene3D AP2/ERF domain 167 226 IPR036955 GO:0003700|GO:0006355
Ahy20g1246 322 ProSiteProfiles AP2/ERF domain profile. 167 224 IPR001471 GO:0003700|GO:0006355
Ahy20g1246 322 PANTHER DNA-BINDING DOMAIN 154 231 IPR044808 GO:0003700|GO:0009873
Ahy20g1246 322 SMART rav1_2 167 230 IPR001471 GO:0003700|GO:0006355
Ahy20g1246 322 Pfam AP2 domain 167 216 IPR001471 GO:0003700|GO:0006355
Ahy20g1246 322 SUPERFAMILY DNA-binding domain 167 225 IPR016177 GO:0003677
Ahy20g1246 322 PRINTS Ethylene responsive element binding protein signature 190 206 IPR001471 GO:0003700|GO:0006355
Ahy20g1246 322 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1246 Ahy-Chr20 24106970 24117833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1246 162 294 AP2-EREBP Transcription Factor Family AT3G16770 48.718 2.36e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy20g1246 AP2 9.80E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1246 K09286 - gmx:100817253 139.813