Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1237 ATGGCGGATCACTCCGATTCTTCTCCTCTGGTCCCTCCCATACCTGTCTCTGATCCTTCCGAGATCGATCTCGAAGCTGGTCCAACCGAACAGATTCAGTGCCGGATTTGTCTTGAAACTGATGGTAGAGATTTCATAGCTCCTTGTAAGTGCAAAGGTACAGCAAAGTATGTACATCGAGAATGTTTGGATCATTGGCGAGCTGTTAAGGTCATTGCTTCGCTGGCTTATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAACTGAGCTTTTACTACATTTGTGGAGCGCTGTTGTTTTTTGCCCTGCTTGGTCTTTCTGGGTGCTTCATCACTTGCTATGATCGACGAGTTCGCAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCACTTGCCAGGCACACTTTGTATGTGGACTGACTGCACCACATGCTTTGAAAGTTGTGGAACAATGGCAACTGAATGTGGTGGATGTTTGGGAGGTGCTGGGGAAGCAGGACTACCATTATTATTCATAATGGCTTTGATTGTTCTGGGACTTTTCACTGTGATTGGGATATTTTACAGTGTATTGGTAGCTACCATGGTAGGACAACGGATATGGCAACGTCATTATCACATACTTGCAAAAAGAATGTTAACCAAGGAGTATGTGGTCGAAGATGTTGATGGAGAACAGACAGGGTCTGATTGGTCTCCCCCTTCTCTCCCACCTGAGCATATTCAACAGCTGAAGACACTGGGCCTCCTTTGA 825 0.4521 MADHSDSSPLVPPIPVSDPSEIDLEAGPTEQIQCRICLETDGRDFIAPCKCKGTAKYVHRECLDHWRAVKVIASLAYLVYLIDGYQQYWLRLLWGFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEQTGSDWSPPSLPPEHIQQLKTLGLL* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1237 274 Pfam RING-variant domain 34 67 IPR011016 GO:0008270
Ahy20g1237 274 PANTHER BNAA04G12620D PROTEIN 71 274 - -
Ahy20g1237 274 PANTHER BNAA04G12620D PROTEIN 1 70 - -
Ahy20g1237 274 ProSiteProfiles Zinc finger RING-CH-type profile. 26 70 IPR011016 GO:0008270
Ahy20g1237 274 CDD RING_CH-C4HC3_MARCH 34 70 - -
Ahy20g1237 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 74 IPR013083 -
Ahy20g1237 274 SUPERFAMILY RING/U-box 29 71 - -
Ahy20g1237 274 SMART ringv_2 33 74 IPR011016 GO:0008270
Ahy20g1237 274 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 71 274 - -
Ahy20g1237 274 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1237 Ahy-Chr20 23626096 23630302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1237 1 274 C3H Transcription Factor Family AT2G22120 71.296 3.59e-159 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1237 - - gmx:100791777 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1237 20 23626096 23630302 Ahy10g0911 10 15573708 15577835 hybridization
Ahy13g3169 13 127067297 127071344 Ahy20g1237 20 23626096 23630302 PCT
Ahy3g2842 3 123748627 123752583 Ahy20g1237 20 23626096 23630302 PCT