Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1224 ATGGCAACCACGTTGACTTGGAGGTTAGCTGCCAACAATGGCACCACCCTCGCTGCTAATGACCTGGAAAGAAATGGTGATGGGAAGGTTCAAGATACAGAGTCTCCAACACCCCATTCTGTTTTGAAGATGGGACTGAGAGAACGCAGTAGCAGCATGGAGGATCCAGATGGGACATTGGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTAAGAGTTCATCTTCTATGCTAGAGAAAGAGAACTCCCTGAAGCAGTTATCGGAGCTTATTGATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAAGCAGTTCCAGTGCTTGTTTCCCTTCTCCGGTCAGGATCCTTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCCCTTTGTAAAGAAAATGAGCTGAGGGTTAAAGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTAGTTTACTCAAGTCCAGTTCTGGTGAAGGTCAAGTAGCTGCTGCCAAGACTATTTATGCTGTCTCTCAAGATGGTGCCAAAGATCATGTTGGTTCAAAAATTTTTTCAACTGAAGGTGTTGTGCCAGTTCTTTGGGAACAATTGAAAAAGGGCATGAAGACTGGAAATGTAGTTGACAATTTATTGACTGGAGCATTGAAGAATCTCTCCAGCAGTACAGAGGGATTCTGGAATGCCACAGTACAAGCTGGAGGAGTGGACATATTAGTGAAGTTACTAACAACAGGACAGTCTGGCACTCAAGCCAATGTGTGCTTTTTACTTGCGTTCTTGATGATGGAGGATGCATCTATTTGTTCAAAAGTGTTGGCAGCAGAGGCAACAAAACATCTTCTCAAACTATTAGGCCCTGGTAATGATGCCCCTGTTAGAGCTGAAGCAGCCGGGGCGCTCAAATCTCTGTCGGCTCAGTGCAAAGATGCAAGACGAGAGATAGCCAATTCTAATGGCATTCCTACTCTGATTAATGCTACCATAGCGCCTTCGAAAGAGTTCATGCAAGGAGAGCATGCTCAAGCATTACAGGAAAATGCTATGTGTGCCCTAGCGAACATCTCTGGTGGCTTGTCTTCTGTGATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCACTTCAGCTGCACAAATTGCTGACACTTTAGGGGCTTTAGCTTCGGCTCTTATGATATATGATGAAAAGGCAGAATCCACAAGAGCATCGGATCCTTTGGCAGTTGAGCAGACATTACTCAATCAGTTTAAGTCTCAGTCTCCCTTCCTTGTGCAGGAACGGACCATTGAAGCGCTGGCTAGTTTATATAGTAATCCCATACTATCAATTAAACTTACAAATTCCGATGCAAAGCGTTTGCTAGTTGGTTTAATAACAATGGCTGCCAGTGAAGTGCAAGACGAGCTTCTAAAAGCTCTCTTGACACTGTGCAATAGTGGAGGCAGTTTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTTTGGGACTTTCATCAGAACAGCAGCAAGAATGTGCTGTTGCCCTACTATGCCTTCTGTCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCGCTTGTGCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGATTCAGCAACAATCCTTAGAAACCTATGCAATCATAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCAGTTCCTGCATTGTTGTGGCTATTAAAGAATGGAAGCGCAAATGGGAAGGAGATTGCTGCAAAAACCTTGAATCACTTAATCCATAAATCTGATACAGCAACTATTAGCCAGCTTACAGCACTATTGACAAGTGATCTACCAGAATCTAAGGTTTATGTCTTAGATGCCTTGAGAAGTATGCTTTCTGTTGTTCCTCTTAGTGATATTTTACGCGAAGGTAGTGCTGCGAGTGATGCAATTGGTACAATGATAAAAATTTTGAGCTCAAGCAAGGAAGAAACTCAGGCGATGTCTGCAGCAGCTCTAGCAGGACTTTTTGAAACAAGAAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTCTATCAGTCTCGAAATTGCTTAATGTCGAATATGAAAGTGTCTTGATGGAAACCTCACACTGCCTGGCTGCAATATTTCTTTCAATCAAAGAGAACAGGGATGTAGCTGCTATTGCTAGAGATTCATTGTCTCCATTGATTGCACTAGCCAACTCCTCAGTTTTGGAAGTAGCAGAGTTGGCAACATGTGCTGTGGCAAATCTTATTTTAGATGGTGAAATTGCAGAGAAAGCTGTTGCAGAAGAGGTTATCATGCCTGCTACAAGAGTATTACGTGAAGGCACAATTTCTGGAAAAACACATGCAGCAGCAGCAATTGCTCGCCTCTTACATTCTAGGCAAGTTGATTATGCTGTAACAGAATGTGTGAATCGTGCTGGTACTGTTCTTGCGTTAGTTTCTTTTCTAGATTCTGCCATTAATGGATCTGCTGCCACATTGGAGGCTCTAGATGCACTCGCTATTCTGTCCAGATCAGAAAAAACCAGCGGAAAGAGTAAACCTGCATGGACAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCTATAGTCCTGTCTATTGCTGATTCTACACCAACATTACAGGATAAAGCTATTGAGATATTATCACGACTATGTAAGGATCAGCCTCTTGTCTTAGGGGACACTGTTGCTACTGCATCTGGATGTATATCTTCAATAGCTAAGAGGATAATTTCTACTTCCACAAATGTAAAAAAAAAAATTGGAGGAGCTGCAGTGCTTATTTGTGCTGCAAAAGTAAATCATCAGAAACTGCTGGAGGATCTGAACTTATCAAACTTGTGTGCTGGTCTTGTTCGATCACTTGTTGATATGCTTAATTCTTCAGACTCATCTTTGGCCAATCAGGGAGATGACAATAGGGAAGTCATCAGCATTTGCCGGCATACAAAAGAAGAATCCAGTGATGATCAATCAAACAGTGGCACTGCCATTATATCTGGTGCCAACTTAGCTATATGGTTACTGTGTATCCTTGCTTGTCATGATGAAAACAGTAGAATTGCAATAATGGAGGCTGGAGCGATTGAGGTTCTCTCAGAGAAGATCTCAAATTATTTCTCACAGTATAGTCAGATTGATGATAAAGAAGACAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTCCAAGATAGAGATATTATACGTGCACATGCAACCATGAAATCTATACCAGCTCTTGCCAATTTGCTGAAGTCAGAAGAATCAGCAAACAAATACTTTGCAGCACAATCAATAGCTAGTCTGGTCTGTAATGGCAGCAGGGGAACACTTCTTTCTGTGGCTAATTCTGGGGCAGCAAATGGACTCATCACGTTGCTTGGCTGTGCCGATACTGATATTCAGGATCTTCTGGAATTGTCCGAAGAATTTTCTTTGGTACGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATCAGAGTTGGTGCCACTTCTCGAAAGGCAATACCTGCCCTCGTTGATCTGCTTAAACCAATTCCAGATCGTCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGACTCAGCTTGCTAGAGATTGTCCATCAAATAAGATTGTAATGGTAGAGTCTGGGGCCTTGGAGGCAATAACTAAATATCTTTCGCTAGGTCCTCAAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTGGCAGTGCTGAGATACGGAGACATGAATCTGCGTTTGGTGCTGTCACTCAACTTGTGGCTGTCCTGCGTTTAGGAGGAAGAGCTGCAAGGCATAGCGCTGCAAAAGCCTTAGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGATACTGCTCGACAAGCTGTTAAACCCTTGGTAGAGATTCTTAATACAGGTCTAGAGAGGGAGCAGCACGCTGCAATTGCTGCATTGGTTAGGTTACTGAGTGAAAACCCTTCAAGAGCACTCGCTGTTGCAGATGTGGAGATGAACGCAGTGGATGTTCTTTGCAGGATCCTTTCATCAAATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTGTGTTGTGTTCTTTTTGCAAATACAAGGATTCGGTCTACGATGGCTGCTGCACGCTGTGTGGAACCTCTGGTCTCTCTCCTTGTAAGTGAGTTTGGTCCAGCTCAACACTCTGTTGTTCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTCGCTGAATTAGTTGCTGCACATGGTGCAGTTATCCCTCTTGTTGGCCTACTGTATGGTAGGAACTATGTTCTTCATGAGGCCATATCGAGAGCTCTAGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAGTGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCTTGAAGCACCTGACTATCTATGTGCAGCTTTTTCGGAACTCTTGCGGATATTGACAAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGGTAGATCCCCTGTTTTCTATGCTGACGAGACAAGAATTTGGGCCTGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAGCATCCACAGTGTCGTGCTGATTACACGTTGACTTCCCACCAAGCTATTGAGCCACTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTACAACAATTGGCTGCTGAACTTCTCTCACATCTACTTCTAGAAGAACACCTTCAGAAAGATCCAGTGATTCAACAAGTAATTGGCCCGCTCATAAGAGTTCTTGGTTCTGGTATACACATTTTGCAGCAGAGAGCTATGAAGGCCCTTGTTAGTATTGCACATATATGGCCTAATGAAATTGCAAAAGAGGGTGGTGTTGTTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCATTCCCCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCATGTGTTCTGCAATTTAGTTCTGAATTCTACTTGGAGGTGCCTGTTGCTGTTTTAGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACAGTTGTTGGTGCATTAAATGCCCTTCTTGTGTTGGAAAGTGATGATGGAACCAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATAGAAGCTCTCTTGGAGCTCCTAAGATCTCATCAATGCGAGGAAACTGCTGCAAGACTCTTGGAAGTATTGCTAAACAATGTGAAGATCAGAGAAACCAAAGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCTTGGATCCACAAACCCAAGCACAGCAGCCAAGGCTATTAGCAACTTTGGCTCTTGGTGATTTATTCCAGAATGAAAGTCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTCGAGGAGCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAACCTTGTAATGTACAGTAGATCAAATAAAAGAGCAGTTGCAGAGGCCGGTGGTGTTCAGGTGGTTCTAGATCTGATAGGTTCTAGTGATCCTGAAACATCTGTTCAGGCTGCGATGTTTATAAAACTTCTGTTTTCAAATCACACTATTCAGGAGTATGCTTCCAGTGAAACAGTCAGAGCAATAACCGCTGCTATTGAGAAGGATTTGTGGGCTACTGGAACTGTGAATGAGGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGATTGAGAGCAACTGAACCGGCAACTCTTAGCATTCCTCATCTCGTTACATCCTTAAAGACAGGCTCAGAGGCTACACAGGAAGCTGCCTTAGACACACTCTCTCTGCTCAGGCAAGCTTGGACTGCATGCCCGGCAGAAGTTTCAAGAGCTCAATCCATAGCAGCTGCAGATGCTATTCCTTTGCTACAATACTTAATCCAATCAGGCCCACCTCGGTTTCAGGAAAGGGCAGAATTCTTGTTGCAGTGTTTGCCTGGTACTCTGGTGGTGATCATCAAGCGTGGTAATAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTATTGCAAGCTGACACTTGGCAATACTCCTGCACGGCAGACCAAGGTGGTCTCAACTGGCCCCAATCCGGAATGGGACGAAAGCTTTTCATGGGCCTTTGAAAGTCCTCCTAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAATGGGGAAGAGTTCATTTGGAAAAGTGACCATTCAAATTGATCGGGTGGTAATGCTAGGAGCAGTATCTGGAGAGTACACACTCTTGCCGGAAAGTAAAAGTGGCCCCTCAAGGAATTTGGAAATAGAATTTCAATGGTCCAACAAGTGA 6459 0.4343 MATTLTWRLAANNGTTLAANDLERNGDGKVQDTESPTPHSVLKMGLRERSSSMEDPDGTLASVAQCIEQLRKSSSSMLEKENSLKQLSELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLSLLKSSSGEGQVAAAKTIYAVSQDGAKDHVGSKIFSTEGVVPVLWEQLKKGMKTGNVVDNLLTGALKNLSSSTEGFWNATVQAGGVDILVKLLTTGQSGTQANVCFLLAFLMMEDASICSKVLAAEATKHLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARREIANSNGIPTLINATIAPSKEFMQGEHAQALQENAMCALANISGGLSSVISSLGQSLESCTSAAQIADTLGALASALMIYDEKAESTRASDPLAVEQTLLNQFKSQSPFLVQERTIEALASLYSNPILSIKLTNSDAKRLLVGLITMAASEVQDELLKALLTLCNSGGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVPLSDILREGSAASDAIGTMIKILSSSKEETQAMSAAALAGLFETRKDVRESSIAVKTLLSVSKLLNVEYESVLMETSHCLAAIFLSIKENRDVAAIARDSLSPLIALANSSVLEVAELATCAVANLILDGEIAEKAVAEEVIMPATRVLREGTISGKTHAAAAIARLLHSRQVDYAVTECVNRAGTVLALVSFLDSAINGSAATLEALDALAILSRSEKTSGKSKPAWTVLAEFPKSISPIVLSIADSTPTLQDKAIEILSRLCKDQPLVLGDTVATASGCISSIAKRIISTSTNVKKKIGGAAVLICAAKVNHQKLLEDLNLSNLCAGLVRSLVDMLNSSDSSLANQGDDNREVISICRHTKEESSDDQSNSGTAIISGANLAIWLLCILACHDENSRIAIMEAGAIEVLSEKISNYFSQYSQIDDKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAANGLITLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEAITKYLSLGPQDATEEAATDLLGILFGSAEIRRHESAFGAVTQLVAVLRLGGRAARHSAAKALESLFSADHIRNADTARQAVKPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCVLFANTRIRSTMAAARCVEPLVSLLVSEFGPAQHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKVEMVKAGVIESILDILLEAPDYLCAAFSELLRILTNNASIAKGPSAAKVVDPLFSMLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVIQQVIGPLIRVLGSGIHILQQRAMKALVSIAHIWPNEIAKEGGVVEISKVILQADPSIPHALWESAASVLACVLQFSSEFYLEVPVAVLVRLLRSGSESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQPRLLATLALGDLFQNESLARTSDAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDTLSLLRQAWTACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQERAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPARQTKVVSTGPNPEWDESFSWAFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK* 2153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1224 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1197 1241 IPR000225 GO:0005515
Ahy20g1224 2152 SUPERFAMILY ARM repeat 1195 1606 IPR016024 -
Ahy20g1224 2152 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 19 2152 - -
Ahy20g1224 2152 CDD C2 2033 2123 - -
Ahy20g1224 2152 Coils Coil 297 324 - -
Ahy20g1224 2152 Gene3D - 877 1170 IPR011989 -
Ahy20g1224 2152 ProSiteProfiles C2 domain profile. 2012 2129 IPR000008 -
Ahy20g1224 2152 SMART arm_5 817 859 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 1399 1439 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 567 607 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 94 135 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 1230 1271 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 311 360 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 525 565 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 1731 1770 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 1858 1898 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 733 771 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 1440 1480 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 1185 1228 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 1567 1608 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 268 309 IPR000225 GO:0005515
Ahy20g1224 2152 SMART arm_5 136 176 IPR000225 GO:0005515
Ahy20g1224 2152 Gene3D - 1177 1318 IPR011989 -
Ahy20g1224 2152 Gene3D - 1680 2030 IPR011989 -
Ahy20g1224 2152 Gene3D - 1319 1679 IPR011989 -
Ahy20g1224 2152 Gene3D - 610 876 IPR011989 -
Ahy20g1224 2152 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 19 2152 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Ahy20g1224 2152 Gene3D C2 domain 2031 2152 IPR035892 -
Ahy20g1224 2152 Gene3D - 426 609 IPR011989 -
Ahy20g1224 2152 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2030 2149 IPR035892 -
Ahy20g1224 2152 Gene3D - 50 410 IPR011989 -
Ahy20g1224 2152 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Ahy20g1224 2152 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Ahy20g1224 2152 SUPERFAMILY ARM repeat 1581 2029 IPR016024 -
Ahy20g1224 2152 MobiDBLite consensus disorder prediction 19 38 - -
Ahy20g1224 2152 SMART C2_3c 2032 2128 IPR000008 -
Ahy20g1224 2152 Pfam C2 domain 2031 2127 IPR000008 -
Ahy20g1224 2152 SUPERFAMILY ARM repeat 1026 1161 IPR016024 -
Ahy20g1224 2152 SUPERFAMILY ARM repeat 659 987 IPR016024 -
Ahy20g1224 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Ahy20g1224 2152 SUPERFAMILY ARM repeat 56 641 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1224 Ahy-Chr20 22998378 23008411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1224 496 620 U-box Gene Family AT3G46510 32.540 1.30e-07 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1224 - - gmx:100816765 3673.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3177 13 127364004 127373550 Ahy20g1224 20 22998378 23008411 PCT
Ahy3g2849 3 123893971 123903463 Ahy20g1224 20 22998378 23008411 PCT