Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1197 ATGCCTCCTCCATTTGATATGATTTCCAAGATACATCTTCCTAGAGAGGCTTGGAGGCTGAAAGCTAGGGTTCTAAGGCTTTGCGTTGTACCCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTAAAAAACTTCAAGATACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAATTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAATCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTGTGTTTATCTGGAATAGATGTCGTTGGTCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGTGCTGGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTATTTGGGGACTATGTTAATCAAGTAAATCATTTTCTTGCCTCTGGCTATGTGGAGCAGCCTGTTTTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTACATTTCAAGTAGGCCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGAACCAATCTGGAGTAA 711 0.3755 MPPPFDMISKIHLPREAWRLKARVLRLCVVPSFGNHEVPNSMEMILLDEHCKKLQDTVKKPLLNRFRDHIIEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRITVVAVDEDVIPKTCFNMLCLSGIDVVGLLTSVGEEKEYAKEGKIVKMIVLELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVLVIQLAKVKFFRGTFQVGLQNVMYATQMLFNPDLPEVVEFRQRTNLE* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1197 236 Pfam Domain of unknown function DUF223 43 109 IPR003871 -
Ahy20g1197 236 CDD RPA1_DBD_A_like 19 107 - -
Ahy20g1197 236 Gene3D - 117 236 IPR012340 -
Ahy20g1197 236 SUPERFAMILY Nucleic acid-binding proteins 3 111 IPR012340 -
Ahy20g1197 236 PANTHER REPLICATION FACTOR A 1, RFA1 22 229 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy20g1197 236 SUPERFAMILY Nucleic acid-binding proteins 128 234 IPR012340 -
Ahy20g1197 236 CDD RPA1_DBD_B_like 129 232 - -
Ahy20g1197 236 Gene3D - 5 112 IPR012340 -
Ahy20g1197 236 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1197 Ahy-Chr20 21539856 21541027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1197 2 231 Core DNA Replication Machinery Family AT5G45400 22.177 4.32e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1197 - - ahf:112717561 393.275