Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1183 ATGGCAGCAGCTATAGATATATACAATAGCATGATGACACAAGATTACTTATCATACTCTTGTAGTGATGAAGAGTTGATGAAAGCACTTGAGCCTTTTATTATGACAAGTGATTATTTTTCATCTAACTCTAATAATAGCAACAGTAACTATAATAATTATTTACCCTCTTTTTCTCTCTCACCTTCTTCCCCTGCTTCATCATCATCACTATACCCTTCTTATTACAATTCCTTCACTTCCAATTACAACCCTTCACCGTTAAATTCTACCACCCAAAGTTCCATAAGACTCAACCAACTCACGCCATCTCAAATTCTCCAAATCCAATCACAAATCCATGTTGCACAACAACAAGAAAAGAATCAACATGCTTTGTCCCTAGGGCCAAAGCCTGTCCCCATGAAGCATGCCGGCGTGACGAATTCCTCTGCGGCCGCGAAGCCTACAAAGCTCTACCGAGGGGTGAGGCAAAGGCATTGGGGAAAATGGGTAGCAGAGATAAGGCTACCAAAGAACCGAACCCGTCTTTGGCTTGGAACATTCGAAACGGCTGAAGAAGCAGCGTTGGCTTATGACAACGCTGCTTTTAAGCTAAGAGGAGAACTTGCACGGCTTAATTTCCCTCACCTTCGCCATCGCGGGGCACACGTGTATGGTGAATTCGGGGAAATCAAGCCGTTACCCTCTTCGGTGGACGCGAAACTCCAAGCCATTTGTGAAGGCTTGGAGAAAACAGAGAAGGTTGTAGTGGATACAAAGCCTAAGATAGAGGAAAATGCAACTGAATCCAACGTTGGATTTGGTTGTGCTGAGTTTGAGGATTATAAGTTGGAGAAGAAGCCAAAGTTGTCTTCACCTTTGCTGTCTGATGAATCGTCCGCCGCGGGCGGTGTGTCTTCGCCAGAATCCGATATCACTTTCTTGGATTTCTCGGATCCAGATGAAATTGATAACCTTGGGTTGGATTTGAAGAAGTATCCTTCAGTGGAGATTGATTGGGCGTCTATATGA 1014 0.4398 MAAAIDIYNSMMTQDYLSYSCSDEELMKALEPFIMTSDYFSSNSNNSNSNYNNYLPSFSLSPSSPASSSSLYPSYYNSFTSNYNPSPLNSTTQSSIRLNQLTPSQILQIQSQIHVAQQQEKNQHALSLGPKPVPMKHAGVTNSSAAAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGELARLNFPHLRHRGAHVYGEFGEIKPLPSSVDAKLQAICEGLEKTEKVVVDTKPKIEENATESNVGFGCAEFEDYKLEKKPKLSSPLLSDESSAAGGVSSPESDITFLDFSDPDEIDNLGLDLKKYPSVEIDWASI* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1183 337 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700|GO:0006355
Ahy20g1183 337 PRINTS Ethylene responsive element binding protein signature 175 191 IPR001471 GO:0003700|GO:0006355
Ahy20g1183 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 337 - -
Ahy20g1183 337 CDD AP2 151 211 IPR001471 GO:0003700|GO:0006355
Ahy20g1183 337 Gene3D AP2/ERF domain 152 210 IPR036955 GO:0003700|GO:0006355
Ahy20g1183 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 337 - -
Ahy20g1183 337 SMART rav1_2 152 215 IPR001471 GO:0003700|GO:0006355
Ahy20g1183 337 ProSiteProfiles AP2/ERF domain profile. 152 209 IPR001471 GO:0003700|GO:0006355
Ahy20g1183 337 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Ahy20g1183 337 Pfam AP2 domain 153 202 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1183 Ahy-Chr20 21013951 21015634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1183 1 337 AP2-EREBP Transcription Factor Family AT1G78080 46.556 2.78e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy20g1183 AP2 1.60E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1183 K09286 - gmx:100815162 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1183 20 21013951 21015634 Ahy10g0871 10 13073940 13075691 hybridization