Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1180 ATGGGAAGAGGCAGAGGAGCTGCGGCTCTGAAACCCACGGTGGTGATTGCGGCAGCGGAGGTAAACGGATTAGGGCCGATGCCAGTATTGAAGGAAGTTAGAAACTGCGGCGTGAGGAAGAGACCGTGGGGAAGATTCACCGTCGAAATCAGAGACCCGTTGAAGAAAGCAAGGGTTTGGCTCGGAACCTTCGATTCCGCCGAGGACGCCGCACGTGCTTACGACGCCGCCGCAAGAACACTCTGGGGACCAAAAGCCAAGACAAAATTTTCTCGCCGCTCAAGATCCAGCCGCCTCCATCAGGCACGGTGTCCTTTCCTTCCTCCTTTGCGACGGCGCCGACCTCGGTACCACAGCCTCAATGTAGAACTGCAGCTTCGCTAG 384 0.5729 MGRGRGAAALKPTVVIAAAEVNGLGPMPVLKEVRNCGVRKRPWGRFTVEIRDPLKKARVWLGTFDSAEDAARAYDAAARTLWGPKAKTKFSRRSRSSRLHQARCPFLPPLRRRRPRYHSLNVELQLR* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1180 127 Gene3D AP2/ERF domain 36 93 IPR036955 GO:0003700|GO:0006355
Ahy20g1180 127 SMART rav1_2 37 97 IPR001471 GO:0003700|GO:0006355
Ahy20g1180 127 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 106 - -
Ahy20g1180 127 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Ahy20g1180 127 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Ahy20g1180 127 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Ahy20g1180 127 Pfam AP2 domain 37 83 IPR001471 GO:0003700|GO:0006355
Ahy20g1180 127 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 3 106 - -
Ahy20g1180 127 SUPERFAMILY DNA-binding domain 37 91 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1180 Ahy-Chr20 20880189 20880572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1180 1 90 AP2-EREBP Transcription Factor Family AT1G50640 66.667 1.49e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy20g1180 AP2 2.20E-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1180 K09286 - zju:107432807 99.3673