Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1166 ATGGCATCTTCCTCCATCACTATTGGTGTTGCGGTTGCCCTCACCGTGCGTCCATTGCTGTTGTGGAAAGTGACATTATGGCCCTCCTCTCACACCTCCTCCATACACCTCTTTCCATTAATTTCTAAGAGTGCTGAGTTTGACGAGGAGGTTCATGCCTATAAAGCTTACGGAAAGTATGCGAGAGATATGGGTTTTACTATCCGTAAAAGAGACCTGTCAAGAGATGAGGATGGAAATTTGAATAGAAGGTACTATGTTTTCAATCGCCAAGGGACAAGGGATCCAAAACACTATCGTCTAGTCGACGGAAAGAGGAATTATAAACCAGAGACTAGAACTGGTTACAAGGCACGTTGTTCTTTGAATGAGGCTGACAAAGCCCAGATTGTTTACATGAAGGAATATGGGTTTCAAACTTCTCAAATTGTTGGGATTTTGGCTAAGCTTGTTGGTGGCTATGGTAACCTTAATTTCACGAAGAAGGATGTTTATAACTTCATTGATCGGGATAGGTGTGCAAAGATAGAGCACAAAGATGCTGCGGCCGTAGTAGCTTATCTTCAGAGTAAGGCAGATGTGGACCCAATGTTTGTTGCTCGTTATACACTACTTTCGACTCCACTTATAAGAAGGATAGATATAATAAACCTGATTTTCTCTGGATCAAATAATCATTGCTTGACTTGCATATTTGGGTTTCTTGTGCTTGCCAATGAAACTCGAGATACCTACACATGGTTGCTGAAGGAATTTTTGGATGTCATGATGAACAAGGAACCAAGTGTTGTAGTGACTGACGATGACGATCAAATGCGACAAGCAATAAAGGAGGTATCGATATATCCTAATATGACGGTACCCCAATTTAAAGCTTACTGGGAAGAAATGATTCAGAAATTTGACATTGGTGAGGACCACTGGCTTTTAACCAAATATGCCAATAAAGAAATGTGGGCCACTATATACCTACGTGGAAAGTTTAGTGCAAGTGTTAGAACAACATCTCGATGTGAAGATTACCGTAACAATGAACTCGTTACTCAATTCAAGTCTATGTATAGTAAGCCATTGCTGACTACTGGGTTGGACTCCATTGAGCAGGCTGCAGCAATGGTTTACACTGCAGAATTATTTGCAGAGGTGGAGGATCAACTAGCAAAAGTTGCTGCACTAAAGCATGTCGGCAAAAGTGGTATGGGCAGTAATGTTGTTCATTGTGTTGCAAAATTTAGACGACCAGGTAGACTTTATCATGTTCTTCATGATGTGACTTCAGAAAGGATTGAATGTGAGTGTCACCGTTGGAAACAAAGTGACATACCATGCAACCATAAAGGAGTAGATACCTCTACATTGTGA 1362 0.4104 MASSSITIGVAVALTVRPLLLWKVTLWPSSHTSSIHLFPLISKSAEFDEEVHAYKAYGKYARDMGFTIRKRDLSRDEDGNLNRRYYVFNRQGTRDPKHYRLVDGKRNYKPETRTGYKARCSLNEADKAQIVYMKEYGFQTSQIVGILAKLVGGYGNLNFTKKDVYNFIDRDRCAKIEHKDAAAVVAYLQSKADVDPMFVARYTLLSTPLIRRIDIINLIFSGSNNHCLTCIFGFLVLANETRDTYTWLLKEFLDVMMNKEPSVVVTDDDDQMRQAIKEVSIYPNMTVPQFKAYWEEMIQKFDIGEDHWLLTKYANKEMWATIYLRGKFSASVRTTSRCEDYRNNELVTQFKSMYSKPLLTTGLDSIEQAAAMVYTAELFAEVEDQLAKVAALKHVGKSGMGSNVVHCVAKFRRPGRLYHVLHDVTSERIECECHRWKQSDIPCNHKGVDTSTL* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1166 453 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 280 IPR031052 GO:0006355
Ahy20g1166 453 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 286 445 IPR031052 GO:0006355
Ahy20g1166 453 Pfam FAR1 DNA-binding domain 57 127 IPR004330 -
Ahy20g1166 453 PANTHER OS01G0607050 PROTEIN 46 280 - -
Ahy20g1166 453 Pfam MULE transposase domain 220 280 IPR018289 -
Ahy20g1166 453 PANTHER OS01G0607050 PROTEIN 286 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1166 Ahy-Chr20 19907713 19910059 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy20g1166 MULE 1.20E-09 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1166 - - ahf:112785563 922.924