Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1144 ATGTCCAATCCCAAAAATCAGTCTGAGGATCCGAATTCTCCGGATCCGAATTGGAATTCGGATCCACAACTCCCGCTCCGTAACCTCGCACAGATCCGAACCCGACTCGATTCCCTCCATCGCTTTTTATCGGAATCCATCACCTCCAACAACCCTCTCTCCGGCGACCAATCCGCTGCCGTCTCCGATCAAATCGCCTCCGCCATCCACCAAAGCATCGCCAACGCCTCCGCCCTCGTCTCCTACTCTAAAACCTTCCACTCGCCGGGTTCCACTCCCGCCGCCGCGCCGCCGTTACCTAGGGTTGACCTATCAGCCAGTGTCGAGAAACTCAAACGCGCGTCGGATCTGAAAATCGAGCCGCCGGACGAGGACACCGCAACCGATGAGTTTGCCGATAGCGACGAGATCGTGGAGCTCGACGCCGTGGAGATCCTCGCGGAGCACCTTCACTTCTGCGAGATCTGCGGGAAAGGGTTCCGGCGAGACGCGAATCTGCGCATGCATATGCGCGCTCACGGGAACCAGTTCAAGACACCGGAGGCACTCGCGAAGCCGGAGAATTCGTCGTCCGCCGCCGTGCGCAGCCGGTTCTCGTGCCCGTTCGAGGGATGCAACAGGAACAAGAACCACCGGCGGTTCAGGCCGCTGAAATCGATGGTGTGTGTGAAGAATCACTTCAAGAGAAGCCACTGCCCGAAGATGTATTCGTGCACGCGGTGCCATAAGAAGAGCTTTTCGGTGCTCTCTGATCTGAAGAGCCACATGAAAAATTGCGGAGAGTCGAAGTGGAAGTGCTCTTGTGGGACCACGTTCTCAAGAAAGGATAAACTTTTTGGGCACATTGCTTTGTTTGAAGGGCATGTACCCTTGCTTGAAGACGATAATAAGGGCAAGCATGTGCAGGAAGATGATGATAGTGATCATTTTAGTGATTTGCCTGATGGCTTTTTTGATGATTTGGGTGATTTGAGCTCTTTAGGGTTTCCCTTAATTTAA 999 0.5415 MSNPKNQSEDPNSPDPNWNSDPQLPLRNLAQIRTRLDSLHRFLSESITSNNPLSGDQSAAVSDQIASAIHQSIANASALVSYSKTFHSPGSTPAAAPPLPRVDLSASVEKLKRASDLKIEPPDEDTATDEFADSDEIVELDAVEILAEHLHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPENSSSAAVRSRFSCPFEGCNRNKNHRRFRPLKSMVCVKNHFKRSHCPKMYSCTRCHKKSFSVLSDLKSHMKNCGESKWKCSCGTTFSRKDKLFGHIALFEGHVPLLEDDNKGKHVQEDDDSDHFSDLPDGFFDDLGDLSSLGFPLI* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1144 332 Pfam Zinc finger, C2H2 type 152 173 IPR013087 -
Ahy20g1144 332 Gene3D Classic Zinc Finger 151 174 - -
Ahy20g1144 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Ahy20g1144 332 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 6 308 - -
Ahy20g1144 332 SUPERFAMILY beta-beta-alpha zinc fingers 148 174 IPR036236 -
Ahy20g1144 332 MobiDBLite consensus disorder prediction 1 26 - -
Ahy20g1144 332 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 6 308 IPR044300 GO:0010044|GO:0010447
Ahy20g1144 332 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Ahy20g1144 332 Gene3D Classic Zinc Finger 224 290 - -
Ahy20g1144 332 SMART c2h2final6 236 257 IPR013087 -
Ahy20g1144 332 SMART c2h2final6 151 173 IPR013087 -
Ahy20g1144 332 SMART c2h2final6 198 231 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1144 Ahy-Chr20 19388227 19389812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1144 134 292 C2H2 Transcription Factor Family AT1G34370 63.190 1.33e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy20g1144 zf-C2H2 0.00022 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1144 - - cam:101491258 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1144 20 19388227 19389812 Ahy10g0844 10 12148294 12149851 hybridization