Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1116 ATGAAGAGAACTGGAAGCTCATCAGATTCTTTAGGAGCTCTCATGACAATTTGTCCATCATCAACAGAGGAGCAGAGTCCGAGGAGCAACCACGTGTACGGGCATGATCCATTGTTCCAGTCGATGGTGCTTGATGGTCTAGACGAAGAAGGGTGCACGGTAGAGGAATCTGGGCACCACTCACAGAAGAAGCGAAGACTTAGCGTGGAACAAGTGAAAGCGTTGGAGAAGAACTTCGAGGTTGAGAACAAGCTTGAACCAGAGAGGAAGGTGAAGTTAGCACAAGAACTTGGTTTGCAGCCTAGACAGGTGGCGGTTTGGTTCCAGAACCGCCGCGCCAGGTGGAAGACTAAACAGCTTGAGAGAGATTATGGCGTTCTTAAAAATAATTATGATGCTCTTAAGGTTAATCATGATGCACTAAAACAGGACAACGATGCGTTGCACAAGCAGATTAAGGAATTGAAGACAAGGCTCCAAGAAGAGAACACAGCAAGCGATGTTTCCGTGAAGGAAGAACAGATAACGATGCCAGAATCAGAAGAGAAATTATTGGTGATGAATGAAGAACACAACACTACTACTCCTGATGAAACCTCAATTCTTGGATCAGGATCCAACGTTAACGATCATCACTTGTACCATGACAATTGCTTCAACGACAACAGCGACCACGCTGTTGTTGCTCTTGGTGCAACAACAACATCGCCGTCGCCATCACCGTCGTCGCCGCCACTCTTCCCTTCAGACTTCAACAAAGACGGTTCTTCCGATAGCGATTCAAGTGCGATCCTAAACGAAGACACCAAAGACGCAATTTCTTCGTCTGGGGTGCTTCAAAGTAACCACCACTTCCTGATGTTTTCAGAGTCTCCTGCATTGAAATTCAACTGTTCCATGTTGGCCTCTTCGTCTTCCATGAATTGCTTCCAGTTCCAGAAACCGCACCAGACTACGCAATACGTGAAGATGGAAGAGCACAATTTCATTGGTGCCGCTGATGAGGCATGCAATTTGATCTTCTCCGATGAACAAGCACCCACCCTTCATTGGTACTCTTCAGATCAGTGGGGTTAA 1077 0.4652 MKRTGSSSDSLGALMTICPSSTEEQSPRSNHVYGHDPLFQSMVLDGLDEEGCTVEESGHHSQKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKNNYDALKVNHDALKQDNDALHKQIKELKTRLQEENTASDVSVKEEQITMPESEEKLLVMNEEHNTTTPDETSILGSGSNVNDHHLYHDNCFNDNSDHAVVALGATTTSPSPSPSSPPLFPSDFNKDGSSDSDSSAILNEDTKDAISSSGVLQSNHHFLMFSESPALKFNCSMLASSSSMNCFQFQKPHQTTQYVKMEEHNFIGAADEACNLIFSDEQAPTLHWYSSDQWG* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1116 358 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Ahy20g1116 358 CDD homeodomain 62 119 IPR001356 GO:0003677
Ahy20g1116 358 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Ahy20g1116 358 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Ahy20g1116 358 MobiDBLite consensus disorder prediction 247 263 - -
Ahy20g1116 358 Coils Coil 117 165 - -
Ahy20g1116 358 Pfam Homeodomain 63 116 IPR001356 GO:0003677
Ahy20g1116 358 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 349 - -
Ahy20g1116 358 SMART HOX_1 61 122 IPR001356 GO:0003677
Ahy20g1116 358 Gene3D - 57 125 - -
Ahy20g1116 358 MobiDBLite consensus disorder prediction 232 263 - -
Ahy20g1116 358 Pfam Homeobox associated leucine zipper 118 160 IPR003106 GO:0006355|GO:0043565
Ahy20g1116 358 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Ahy20g1116 358 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 349 IPR045224 GO:0003700
Ahy20g1116 358 SUPERFAMILY Homeodomain-like 53 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1116 Ahy-Chr20 18181020 18185166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1116 1 357 Homeobox Transcription Factor Family AT4G40060 44.267 3.98e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy20g1116 Homeodomain 4.40E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1116 K09338 - fve:101309384 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1116 20 18181020 18185166 Ahy10g0817 10 11222632 11225984 hybridization
Ahy13g4081 13 140303481 140305775 Ahy20g1116 20 18181020 18185166 PCT
Ahy3g3803 3 137449507 137451788 Ahy20g1116 20 18181020 18185166 PCT