Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1110 ATGGAGTTTTCTACACCTGAGGAGGCAAGCAGCTTCTATAACAACTACAGCCGACTAAAGGGCTTTTCCTCAATGCGCGATAAGACGGTTAGAAACACTTTCAGTGAGATTGTGAGGTACATGTTCGTTTGTAACAGGCAAGGGTTTCAAGAGAAGAAGTTGTTGGAAAAGGTTGATCGCAAAAGGGATCATAAGGTTGTAACCCGATGCAGATGTCTTGCCGAGATGAGGATAAAGCGGAAAGACGGTAGTGGGAAGTGGTACGTGTCGCGTTTCGTCGAGGAGCATAATCATGAACTAGCGTTCGGCAAGCTTGTGGATTATCTACGGTCACATAGGAAGATATCTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGGGAGATTGGGATTAGCATTCCAAAGATTTATAAGTCATTTGCACCACAACTTGTGAGTTTCAACCTGGTTACATTTACAAAGCAAGATATGTATAATGAGGAAGATTATTCCGTGTTCGGCGATGTGCTAGCATTTGATGCTACGTACGGTCGTAACAAGTATAACCTCCCTGTTGTTGTGTTCTCCGGACAATTTTTGGAATGCATGCAAGGAAAGGCACCGCAATCTGTTGTCACCGATGGTGACCCAGCCATGCAGTTGGCGATTCAAAATGCAACATCGAACATCTGTGACCCGGGATTCACACAACTATTTCGACATTGCATGTTGGATGATATGGAAATTGATGAGTTTGAAGCGCATTGGGCCTCCATGATCCATGAGTATGGTGTTGGCGACGTTGACTGGGTGAAGGACTTGTATGTGAAAAAGTACACATGGGCAACAGCTGGGAGGTGTGTCGATTTTCTTTGGGACAACGAGGATGAGCTGGAATTTCACTCTTGGTATGGTACACTTATTTTACAAACCGAGTTTGTTGAGTTGGAAAAGTCAGGGTGGACCAAGTTCACTCGTGAGATGTTCGTTAGATTTCAGGAAAGCCTGAAACGTTGTGTCCGTGTGAGAATATCTGAAATTAATGAAACAGTGCACCCGCATATATATACTATCCAAAAGTATCGGAGGCCTAACATGACCTGGCAGGTCTGTAGGGAGCCTATTTCCAACAGCTTTAGCTGCACGTGTATGCGGATGGATTCGTTTGGTATTCCATGTGTGCACATCATGGCCGTGTGTGTAAGGCTAGACTTAGGGAAACTTTCTGAAAGCCTAGTTTTGCGTAGGTGGTCCAAGACAGCCAAAATACAGTCCGAAAATGAAAACATTGAGCACTGCACTGCTGACCAAAGCATGACATATAGAACAAGGTTGGTAGCATTTTTACAGCTGTGCAAGCGGTTAGCCCGGGTGGCTTGCATGAGTGATGATGACTTTAAGATTTACTCGAAGAAACTTTTATCCGATGCGGTTTTTCTTGAAATAAAGTATGGCCTTCGACCAAGAATCAATGTTCTCGCAACAACAACCGACAATGGAGTGAAGGACCCAGTTCGTGTTAGAACTAAAGGTACAGGTCGGTGCAGTCAAGCCGGTGCTTCTGCTACCAAGAAGAAAAGGAAGTGA 1566 0.4457 MEFSTPEEASSFYNNYSRLKGFSSMRDKTVRNTFSEIVRYMFVCNRQGFQEKKLLEKVDRKRDHKVVTRCRCLAEMRIKRKDGSGKWYVSRFVEEHNHELAFGKLVDYLRSHRKISEVEVAQLTSMREIGISIPKIYKSFAPQLVSFNLVTFTKQDMYNEEDYSVFGDVLAFDATYGRNKYNLPVVVFSGQFLECMQGKAPQSVVTDGDPAMQLAIQNATSNICDPGFTQLFRHCMLDDMEIDEFEAHWASMIHEYGVGDVDWVKDLYVKKYTWATAGRCVDFLWDNEDELEFHSWYGTLILQTEFVELEKSGWTKFTREMFVRFQESLKRCVRVRISEINETVHPHIYTIQKYRRPNMTWQVCREPISNSFSCTCMRMDSFGIPCVHIMAVCVRLDLGKLSESLVLRRWSKTAKIQSENENIEHCTADQSMTYRTRLVAFLQLCKRLARVACMSDDDFKIYSKKLLSDAVFLEIKYGLRPRINVLATTTDNGVKDPVRVRTKGTGRCSQAGASATKKKRK* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1110 521 Pfam SWIM zinc finger 373 394 IPR007527 GO:0008270
Ahy20g1110 521 Pfam FAR1 DNA-binding domain 11 101 IPR004330 -
Ahy20g1110 521 ProSiteProfiles Zinc finger SWIM-type profile. 359 397 IPR007527 GO:0008270
Ahy20g1110 521 SMART 26again6 372 399 IPR006564 GO:0008270
Ahy20g1110 521 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 191 277 IPR031052 GO:0006355
Ahy20g1110 521 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 141 IPR031052 GO:0006355
Ahy20g1110 521 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 161 190 IPR031052 GO:0006355
Ahy20g1110 521 PANTHER OS02G0262500 PROTEIN 191 277 - -
Ahy20g1110 521 PANTHER OS02G0262500 PROTEIN 1 141 - -
Ahy20g1110 521 PANTHER OS02G0262500 PROTEIN 161 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1110 Ahy-Chr20 17965395 17967349 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy20g1110 FAR1 2.00E-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1110 - - aip:107620257 1068.53