Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1108 ATGAGGAGGCTGAAGACGGGGGGGATTAAACAGAAGCTGCGTGCGCACATTTGGGTAATAGAGCAGAGGAGGAAGAATAGGAAGGCTTCACGGGAAAACAAGGACAAAAGGCCCTATAGAGGAGTAAGGAGAAGGCCATGGGGTAAATTTGTAGCTAAGATTAGAGACTCAACAAGAAATGGTGTTAGGGTTTGGATTGGAACATTTGACACAGCCGAAGTTGCAACTTTGGCTTTTGAACAAGCTACGTTCACTACAAGAGGTTCCTTGGTAGTTCTCAATTTCCCTGAAGTTGTTTGGGAATCACTGAACAACATTATGGTAAACACTAACAACAACAATAATAAGGAAGAAGGCTCTTCTCCTGTTTTAGCATTCAAAAGGAAACATACTGTGAGGAAAAATTCAACGTCAAAGTCAAAGTCAAATGTGATGATTAGTAATAGCAACAATAACACCAACAACAATAGCAATGAGAAGGTTTTGGTGTTAGAGGATCTGGGTTCTCAGTATCTTGAACAGATTCTGAGTTTGACTTCTTCGGAAGGCATTATTTGCTAG 561 0.4082 MRRLKTGGIKQKLRAHIWVIEQRRKNRKASRENKDKRPYRGVRRRPWGKFVAKIRDSTRNGVRVWIGTFDTAEVATLAFEQATFTTRGSLVVLNFPEVVWESLNNIMVNTNNNNNKEEGSSPVLAFKRKHTVRKNSTSKSKSNVMISNSNNNTNNNSNEKVLVLEDLGSQYLEQILSLTSSEGIIC* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1108 186 MobiDBLite consensus disorder prediction 137 157 - -
Ahy20g1108 186 Gene3D AP2/ERF domain 38 98 IPR036955 GO:0003700|GO:0006355
Ahy20g1108 186 ProSiteProfiles AP2/ERF domain profile. 38 96 IPR001471 GO:0003700|GO:0006355
Ahy20g1108 186 Pfam AP2 domain 39 85 IPR001471 GO:0003700|GO:0006355
Ahy20g1108 186 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Ahy20g1108 186 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Ahy20g1108 186 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Ahy20g1108 186 PANTHER DNA-BINDING DOMAIN 28 179 IPR044808 GO:0003700|GO:0009873
Ahy20g1108 186 MobiDBLite consensus disorder prediction 131 157 - -
Ahy20g1108 186 SMART rav1_2 38 102 IPR001471 GO:0003700|GO:0006355
Ahy20g1108 186 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 28 179 - -
Ahy20g1108 186 CDD AP2 39 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1108 Ahy-Chr20 17950392 17951192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1108 34 183 AP2-EREBP Transcription Factor Family AT3G23240 49.007 4.59e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy20g1108 AP2 6.70E-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1108 K14516 - gmx:100780775 175.252