Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1101 ATGGGTCTCTCAAATTACCCATGTGCAGCTGAAGGGGTGATACCTTTAATTGTGATGAACACGGTTATGTCTGTTGCTATATTGAAGAACATGTTTAGATCGGTGCTTCAAGCTGTTGGTGCCACCACTTCTTCAGATACCAGTTCTTCATATTACCCATCATCGTATAGTAGCATGTTTCAAGACACAACATCATGCGAAAGTTCGAGTTGTTCTAGGCCAAGAAGTGTGTCCATAACACACTACAAGTCATTGTGCCACAACAACAATAAGAGTGTTATGGTGGAGTGTTGCGTGTGCCTCACAGGGTTCGAAGCGAATCAAGAGGTTAGCGAGTTGCCTTGCAAGCATTTCTTCCACACAAGCTGCTTAGACAAATGGTTTGATAACATGCACACCACTTGCCCTTTGTGCCGTTCATTCTCCTAG 429 0.4382 MGLSNYPCAAEGVIPLIVMNTVMSVAILKNMFRSVLQAVGATTSSDTSSSYYPSSYSSMFQDTTSCESSSCSRPRSVSITHYKSLCHNNNKSVMVECCVCLTGFEANQEVSELPCKHFFHTSCLDKWFDNMHTTCPLCRSFS* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1101 142 SUPERFAMILY RING/U-box 81 140 - -
Ahy20g1101 142 Pfam Ring finger domain 96 139 IPR001841 -
Ahy20g1101 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 141 IPR013083 -
Ahy20g1101 142 SMART ring_2 97 138 IPR001841 -
Ahy20g1101 142 SMART ringv_2 96 139 IPR011016 GO:0008270
Ahy20g1101 142 PANTHER F21J9.24-RELATED 1 141 - -
Ahy20g1101 142 PANTHER - 1 141 IPR044249 -
Ahy20g1101 142 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1101 Ahy-Chr20 17736965 17738308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1101 1 140 C3H Transcription Factor Family AT2G04240 35.811 1.21e-22 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1101 K16285 - gmx:100811790 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1101 20 17736965 17738308 Ahy10g0806 10 10649412 10650656 hybridization