Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1088 ATGTTAGGAGAAGAAGGAAAAATAAACAAGCCCTCTGGTAGCGGCACTCTTGCTCGGAGAACCTATTCCCGTTCGGTTTCATGGACGGATAGGTCTCCGAGCAGCCGCCACAAGGCACCACCACAACCACCAAACACAAAGCCAAGGCCATTTTTGCCACCTCTTCAGCCTCTTTCCATAAGAAAGCCCAGCGTCGAGGAATGGCCAAGCGCAGGATCCGACGATCTTGGCGTTTGGCCAGTTCCCCAGACACCAAGAGGGTCTATAAGACAGTTGGACTCCAGTCAACCCACCAAAGAGTTTCAGTTCAAGAGAGACAAACTGGCCTTCTATGACAAAGAATGTTCTAGAATCGCGGAGCATATATACTTAGGAAGCGACACGGTTGCCAAGAACCATGAGCTCCTTAGGCAGAATGGAATCACTCATGTGCTGAACTGCGTTGGTTTCGTTTGCGCGGAGTATTTCAAAAGCGACTTTGTTTACAAAACACTCTGGTTGCAGGACAGTCCTTCGGAGGATATAACAAGTATTCTCTATGATGTGTTTGACTATTTTGAAGATGTTCGAGAGCAGGGCGGCCGCGTCCTCGTCCATTGCTGTCAAGGCGTTTCGCGGTCGTCCTCTCTCGTCATTGCCTACCTCATGTGGAGGGAGGGACAAAGCTTTGAAGATGCTTTCCAGTATGTCAAGAATGCAAGGGGAGTGACAAATCCAAACATGGGTTTTGCATGTCAGCTTCTTCAGTGTCAAAAAAGGGTCCACGCTCTGCCTGCTAGCCCCAATTCTATTCAAAGGATGTACCGAATGGCGCCTCATTCGCCATATGATCCTCTTCATTTGGTACCAAAGACGGTTAATCAGCCGGGCGCGAAAGCGCTCGATTCTCGTGGGTCTTTCGTTGTCCATGTTCCCTCTACAATCTACATTTGGATTGGCAAAAACTGCAGCCCGATGATGTCCTCGAACGCGCGAGGCGCGGCGCTTCAGGTAGTCCGGTATGAGAGGGCTAAGGGACCCATTTTGACGATCCATGAAGGTGAGGAAACACCTCAGTTTTGGATTGCTCTGTCTTCGGGTGATTCGGAGAAAGAAGGGGTGGAAATTGGCAAGGCAGCCGATATTGGTGCAAGAAAAGTTGGGGCATATGATTTGGATTTTGAGATCTTTTACAAGGCAGTTGCCGACAGTGCAGGATCGGAGACTTGTGTGCCGGCGAAGGAGCACGGATGGGGAATACTGAGGCAGAAGCTTGCTACAGGAGTCATGAGAGAGTTGCTTAGTTCTCCCAAATGTGTGAATATCGAAGACGGTGAAGAAGAGAAGCCAAACTCTGAGATTGAGCCTTTGTCACCGTCATCTAATCATTCCTTTAAATGTTATTTGAATAATAATAACAATTCAGACGCAATAGTAGTGGAGGATACTCCTAAAGCCGCGGACTCATCACTGTTATCTATTTCTGGTGTTGCTTCGAATCCTTTTCCGTGGAACAAATCGCCAACGCTTTCGCCTTCAAGCTCCGATTATGCAAGCTCTTTCACATTTTCACCTTCCTCAGGGAATTGGTCTGATTTGTCATTTGTGTCATCTAGGCAGCCATCACCTTCTGGCATGGAATCAACCGAAGACGCGCCTTTTGCCGAGAGCTCCTCGTTACTTCACAAAGAAGTCTCCTCAACGCCGGAAACATTCTTGGCTAACGATGGTTTGGGAGGGGCGAGCTCCTATTTCCAGATGAAAGGATCCTCCCTCTCAATAGCAGAGCGTCGGGGGAGTAATCCGCCGCCTCGGGTGCTGCTATCGTCCATTAACGAATCATCTCAGCTCCACAAGAACCTGGAGGATTGCATGTATTAA 1860 0.4876 MLGEEGKINKPSGSGTLARRTYSRSVSWTDRSPSSRHKAPPQPPNTKPRPFLPPLQPLSIRKPSVEEWPSAGSDDLGVWPVPQTPRGSIRQLDSSQPTKEFQFKRDKLAFYDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGFVCAEYFKSDFVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSSSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHALPASPNSIQRMYRMAPHSPYDPLHLVPKTVNQPGAKALDSRGSFVVHVPSTIYIWIGKNCSPMMSSNARGAALQVVRYERAKGPILTIHEGEETPQFWIALSSGDSEKEGVEIGKAADIGARKVGAYDLDFEIFYKAVADSAGSETCVPAKEHGWGILRQKLATGVMRELLSSPKCVNIEDGEEEKPNSEIEPLSPSSNHSFKCYLNNNNNSDAIVVEDTPKAADSSLLSISGVASNPFPWNKSPTLSPSSSDYASSFTFSPSSGNWSDLSFVSSRQPSPSGMESTEDAPFAESSSLLHKEVSSTPETFLANDGLGGASSYFQMKGSSLSIAERRGSNPPPRVLLSSINESSQLHKNLEDCMY* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1088 619 SUPERFAMILY Actin depolymerizing proteins 260 369 - -
Ahy20g1088 619 MobiDBLite consensus disorder prediction 14 36 - -
Ahy20g1088 619 Pfam Dual specificity phosphatase, catalytic domain 122 252 IPR000340 GO:0008138|GO:0016311
Ahy20g1088 619 ProSitePatterns Tyrosine specific protein phosphatases active site. 198 208 IPR016130 GO:0016311|GO:0016791
Ahy20g1088 619 SMART VILL_6 266 360 IPR007122 GO:0051015
Ahy20g1088 619 CDD DSP 115 249 - -
Ahy20g1088 619 Gene3D Severin 265 364 IPR029006 -
Ahy20g1088 619 ProSiteProfiles Dual specificity protein phosphatase domain profile. 114 256 IPR020422 GO:0006470|GO:0008138
Ahy20g1088 619 MobiDBLite consensus disorder prediction 37 57 - -
Ahy20g1088 619 MobiDBLite consensus disorder prediction 1 96 - -
Ahy20g1088 619 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 255 IPR029021 -
Ahy20g1088 619 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 234 IPR000387 GO:0016311|GO:0016791
Ahy20g1088 619 Gene3D Protein tyrosine phosphatase superfamily 88 256 IPR029021 -
Ahy20g1088 619 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 3 562 - -
Ahy20g1088 619 MobiDBLite consensus disorder prediction 527 553 - -
Ahy20g1088 619 SMART dsp_5 114 253 IPR020422 GO:0006470|GO:0008138
Ahy20g1088 619 PANTHER MKPA PROTEIN 3 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1088 Ahy-Chr20 17241600 17244858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1088 33 150 Protein tyrosine phosphatase (PTP) family AT3G55270 50.000 2.33e-31 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1088 - - gmx:100775448 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1088 20 17241600 17244858 Ahy10g0795 10 10341079 10344620 hybridization
Ahy13g4069 13 140143559 140146069 Ahy20g1088 20 17241600 17244858 PCT
Ahy3g3790 3 137297632 137300166 Ahy20g1088 20 17241600 17244858 PCT