Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1080 ATGGCGATGGTTTCTTCTCTCTCTGCGGCACTACTTCCTCCTCTTTCTCTCTCTACCTCTTCCTCCTCGCTCTCTTCCAACCTAAAGTTTTCGGCTTTGTGCTTTCAATCTGGTAACACCTTCAAGCTCAGAACCCCTAAGCTGCTTCACTCATCAACTAGGGTTTATGCCGCGCCTGAAGTTTTGGATTCGGAGGAACCGCTAGACGTACCTCCAGAAACCCTTGGTGATGAATCTGAGGCCACCACCTTTCAGGTTGGAGATTCAGACACTCGTACCACTTCCTCAATTAGCATTGGTGGTGATCCGGATACAATGGCGCCTAAGCAGAAGATTAGAATCAAACTTAGGTCTTACTGGGTGCCCTTGATAGAGGATTCTTGCAAGCAGATACTAGATGCAGCAAGGAATACCAATGCAAAAACCATGGGTCCTGTACCATTGCCAACTAAGAAGAGAATTTATTGTGTTCTTAAATCGCCACATGTACATAAGGATGCTCGATTCCATTTTGAGATCAGAACACATCAGCGTCTCATTGATATTTTGTATCCTACAGCACAAACAATAGATTCTCTGATGCAGCTTGATCTTCCTGCTGGTGTGGATGTAGAGGTCAAGCTCTGA 627 0.4545 MAMVSSLSAALLPPLSLSTSSSSLSSNLKFSALCFQSGNTFKLRTPKLLHSSTRVYAAPEVLDSEEPLDVPPETLGDESEATTFQVGDSDTRTTSSISIGGDPDTMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1080 208 PRINTS Ribosomal protein S10 family signature 167 181 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy20g1080 208 PRINTS Ribosomal protein S10 family signature 111 124 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy20g1080 208 PRINTS Ribosomal protein S10 family signature 146 161 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy20g1080 208 PANTHER BNAC05G40270D PROTEIN 4 208 - -
Ahy20g1080 208 Pfam Ribosomal protein S10p/S20e 113 207 IPR027486 -
Ahy20g1080 208 MobiDBLite consensus disorder prediction 60 104 - -
Ahy20g1080 208 SMART Ribosomal_S10_2 113 207 IPR027486 -
Ahy20g1080 208 ProSitePatterns Ribosomal protein S10 signature. 135 150 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy20g1080 208 Gene3D Ribosomal protein S10 domain 102 208 IPR036838 -
Ahy20g1080 208 MobiDBLite consensus disorder prediction 78 101 - -
Ahy20g1080 208 Hamap 30S ribosomal protein S10 [rpsJ]. 109 208 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy20g1080 208 SUPERFAMILY Ribosomal protein S10 111 208 IPR036838 -
Ahy20g1080 208 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 4 208 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy20g1080 208 TIGRFAM rpsJ_bact: ribosomal protein uS10 110 207 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1080 Ahy-Chr20 16993826 16996200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1080 110 208 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 31.000 7.87e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1080 K02946 - gmx:100526953 304.293