Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1077 ATGGGAAAGAAAGGTGGATTGTTTCGTTATGCGGATGGAGTTGACAAATTGCTATTGTTGTTTGGAACTATGGGTTGCATAGGGGATGGGCTACAAACACCTATCACAATGTTTGTTTTTGGGAGTTTGATTGACGATTATGCACGTGGTTCTGGAGATTCTGTTCCTAAGCATATCATAGACAAGTACGCTCTCAAGTTGCTGTATATTTCCATCGGGGTTGCTGTATGTGCTTTTGTTGAAGCAGTATGTTGGACAAGAAGTGCAGAAAGACAAAGTTGTCGCATGAGAATTGAATATCTTAAATCAGTTCTCAAGCAAGATGTTGGCTTCTTTGACAAGCAAGCCGATAGTGATTCTTCAAAGACCTTCCAAGTAATTTCTACCATAACTTCTGATGCCCAAACAATCCAAGACACCATGGCTGAGAAGATACCGAACTGTCTAGTTCACCTCTCAGCATTTTTTTCTAGCTTCATAGTAGGACTCTTCCTCTCATGGAGGCTTGTAATAGCTGCATTTCCATTCTCAATAATGATGATCATGCCAGCAATCATATTTGGGAAGGAAATGAAAGATCTTGGGGAGAAAATGAAGGATGCATATGGCGTAGCAGGGAGCATAGCGGAACAAGCTATCTCGTCGATTCGAACGGTTTATTCATATGTTGCCGAGAAAGAAACACTAAAGAGGTTTAGCTCTGCTCTTGAAAGGAGTATGGAGCTGGGAATAAAGCTAGGGAGAACAAAGGGTGTTGTAGTTGGTAGCTTTGGGTTGCTTTATGCTACTTGGGCATTTCAATCTTGGGTTGGAAGTGTTGTGGTCAGGACTACAGGTGAAAGAGGCGGACTTGTGTTTGCTGCTCAAATTTGCATGATTTACGGAGGACTGTCTCTGATGAATGCACTTCCAAATCTAACTTTCATAGTAGAGGCAAAAGTAGCAACAACCAGAATTTTCCAAATGATTGAGCAAATACCAATCATAAACTCTCACCAACAAAAAGGAAGGATCTTAAGCCATGTGAGAGGAGAAATCACATTCACAAAAATTGACTTCACTTATCCATCACGACCGGACACACCGATTCTCCAAGGACTGGATCTGAAGTTTCCAGCATGTAAAACAATAGGCCTAGTTGGAGGCAGTGGTTCTGGAAAATCCACAATCATCTCTTTGATTGAAAGGTTCTATGATCCTTTATATGGTGAGATATTGCTTGATGGACATGATATAAAGAGGCTTGAGCTTAAGTGGCTAAGGTCACAAATGGGACTTGTTAATCAGGAGCCTATTCTGTTTGCAACATCAATTAGGGAGAATATTCTGTTTGGCAAGGAAGGTGCTTCAATGGAAGCTGTTATAGATGCAGCTAAGGCTGCAAATGCACATGGTTTCATTGTTAAACTTCCTAGTGGATATGAAACTCAAGTGGGACAACTTGGGACTCAGTTATCTGGAGGTCAAAAGCAAAGAATTGCAATAGCAAGGGCCCTAATTCGCAACCCGAAAATCCTACTCCTTGATGAAGCCACAAGTGCATTGGATTCAGAGTCTGAAAGAATAGTGCAAGAGGCCCTTGATTTGGCTTCAAGAGGCAGAACAACAATCATTGTAGCTCATCGCTTATCGACGATTCGAAATGCTGACTGGATAGTAGTCCTTCAATCAGGAAGAGTTGTTGAATCTGGCTCCCATGTTGAGCTACTCAAACTTAACAATGGACAAGGTGGTGCTTATAGCAAAATGCTAAAACTACAACAACAAACAAATCAAAATGAAGATTCAACATTGAATCATGTGAGCAAGAGTCCCCAAGTTATGTCATATTTAACAAGTCCAAGATCAATGCCAGGTACTCCAACTCATCATTCATTCACCTCACCAATATACTCAATCAGTGTTCTGGGGTCCCCTTTTGATGACTACACTGAGAATTCTGAGATAACTTCAAAAGCAAGTTTCTCGCAATGGCGTTTGATAAGAATGAATTCCCCTGAGTGGAAGTATGCTCTGATAGGATGCTTAGGTGCTATTGGCTCTGGAATTTGCCAACCTTTTTACTCTTATTGCCTTGGATTCATTGCTTCTATCTACTTTATAACCGATCACTCGCGCATTGTCTCACAAATCAGGCTGTACTCATCAATTTTCTGCATCATAGCAGTTGTCAACTTCATATCAGGCCTAATTCAGCACTCGAGCTTCGCCATCATGGGCGAGAAATTGCTAAAAAGGGTGCGCGAGAATCTGCTAGAGAAAATCCTTACATTTGAAATAGGATGGTTTGATCAAGAAGATAACAGCAGTGCAGCCATCTGCGCTCGTTTGGCGTTTGATGCAAACTTGGTCAGGTCTCTTGTAGCAGAAAGAATGTCATTACTAGTTCAAGTATTTGTCACTGCCACCCTGGCTTTCGCACTCGGTTTATATGTCTCATGGAAGGTGGCAATGGTAATGATAGCTATGCAGCCCTTGATCATTGCTTGTTTCTATTCCAAATTCATGCTTATGAAAAGTATGTCAGGTAAAGCAAGAAAGGCTCAAAGTGAAGGTAGTCAATTAGCAATGGAAGCTACCATTAACCATAGAACTATTGCTGCATTTTCATCAGAGAAAAGGGTATTGAATTTGTTCAAAAATTCAATGAAAGGACCTCATTTGGAAACCGTAAAGCAATCATGGATTTCAGCTGCAATTTTGTCGTTGTCACAGTTCATAACTACAGCTTCTATAACCTTAACATTTTGGTATGGAGGATTGCTACTAAACAAAAAGATGGTGAATTCAAATGACCTTTTGCAAGTTTTCTTAATACTGATGGGAACTGGAAGACAAATTGCTGAGACAGTAAGCATGACTTCGGACATAGCGAAAAGCGGGAAAGCCGTTAGCTCGATTTTTGCAATTTTGGACAGGAAAACTCAGATTGAACCTGAAGATCCTAGGCTTATGAAGTTCAGAAAGAACAACAACATAAAGGGTCATGTGAAGTTAAAAGATGTGTTCTTTTCATACCCATCAAGGCCAGAACAAATGATCCTAAAGGGTCTTAGTCTTGAAATTGAAGCTGGGAAAACAATTGCATTGGTGGGGCAAAGTGGGTCAGGGAAATCCACTATCATTGGACTAATTGAAAGATTTTATGACCCAATTAATGGATCAATATTTATTGATGGTTGTGACATTAGGGAATTTGATTTGAGAAGTTTGAGGTTACATATTGCATTGGTGAGTCAAGAGCCTACACTCTTTGGTGGAACTATACGTGATAACATTGTGTATGGAAAGATTGATGCATCTGAAGATGAAATAAGAAAGGCAGTGCGTCTTGCAAATGCTCATGAGTTTATAAGTTCAATGAGAGATGGATATGATACATACTGTGGAGAAAGAGGAGTGCAGCTTTCAGGGGGACAAAAGCAAAGAATTGCAATTGCCAGAGCAATACTAAAGAACCCATCAATCCTTCTCATGGACGAAGCAACAAGTGCTCTCGACAGCGTTTCAGAGAATCTAGTGCAAGATTCCCTGGAGAAAATGATGGTTGGAAGAACATGTGTGGTTATTGCTCATCGTTTGTCTACAATTCAGAATGTGGACACCATTGCTGTGATCAAGAATGGGAAATTGGTGGAGCAAGGTTCACACTCCCAGTTAATGAATGTTGGAACAAAGGGTGCTTACTACTCCATGATTAGGTTACAACGTGGGACTAACTCTACTAGCTGA 3732 0.4059 MGKKGGLFRYADGVDKLLLLFGTMGCIGDGLQTPITMFVFGSLIDDYARGSGDSVPKHIIDKYALKLLYISIGVAVCAFVEAVCWTRSAERQSCRMRIEYLKSVLKQDVGFFDKQADSDSSKTFQVISTITSDAQTIQDTMAEKIPNCLVHLSAFFSSFIVGLFLSWRLVIAAFPFSIMMIMPAIIFGKEMKDLGEKMKDAYGVAGSIAEQAISSIRTVYSYVAEKETLKRFSSALERSMELGIKLGRTKGVVVGSFGLLYATWAFQSWVGSVVVRTTGERGGLVFAAQICMIYGGLSLMNALPNLTFIVEAKVATTRIFQMIEQIPIINSHQQKGRILSHVRGEITFTKIDFTYPSRPDTPILQGLDLKFPACKTIGLVGGSGSGKSTIISLIERFYDPLYGEILLDGHDIKRLELKWLRSQMGLVNQEPILFATSIRENILFGKEGASMEAVIDAAKAANAHGFIVKLPSGYETQVGQLGTQLSGGQKQRIAIARALIRNPKILLLDEATSALDSESERIVQEALDLASRGRTTIIVAHRLSTIRNADWIVVLQSGRVVESGSHVELLKLNNGQGGAYSKMLKLQQQTNQNEDSTLNHVSKSPQVMSYLTSPRSMPGTPTHHSFTSPIYSISVLGSPFDDYTENSEITSKASFSQWRLIRMNSPEWKYALIGCLGAIGSGICQPFYSYCLGFIASIYFITDHSRIVSQIRLYSSIFCIIAVVNFISGLIQHSSFAIMGEKLLKRVRENLLEKILTFEIGWFDQEDNSSAAICARLAFDANLVRSLVAERMSLLVQVFVTATLAFALGLYVSWKVAMVMIAMQPLIIACFYSKFMLMKSMSGKARKAQSEGSQLAMEATINHRTIAAFSSEKRVLNLFKNSMKGPHLETVKQSWISAAILSLSQFITTASITLTFWYGGLLLNKKMVNSNDLLQVFLILMGTGRQIAETVSMTSDIAKSGKAVSSIFAILDRKTQIEPEDPRLMKFRKNNNIKGHVKLKDVFFSYPSRPEQMILKGLSLEIEAGKTIALVGQSGSGKSTIIGLIERFYDPINGSIFIDGCDIREFDLRSLRLHIALVSQEPTLFGGTIRDNIVYGKIDASEDEIRKAVRLANAHEFISSMRDGYDTYCGERGVQLSGGQKQRIAIARAILKNPSILLMDEATSALDSVSENLVQDSLEKMMVGRTCVVIAHRLSTIQNVDTIAVIKNGKLVEQGSHSQLMNVGTKGAYYSMIRLQRGTNSTS* 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1077 1243 SUPERFAMILY ABC transporter transmembrane region 659 979 IPR036640 GO:0005524|GO:0016021
Ahy20g1077 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1236 IPR027417 -
Ahy20g1077 1243 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 319 - -
Ahy20g1077 1243 Gene3D - 983 1241 IPR027417 -
Ahy20g1077 1243 Gene3D ABC transporter type 1, transmembrane domain 7 963 IPR036640 GO:0005524|GO:0016021
Ahy20g1077 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 672 959 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ahy20g1077 1243 CDD ABC_MTABC3_MDL1_MDL2 346 587 - -
Ahy20g1077 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 997 1233 IPR003439 GO:0005524
Ahy20g1077 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 346 582 IPR003439 GO:0005524
Ahy20g1077 1243 Pfam ABC transporter 364 513 IPR003439 GO:0005524
Ahy20g1077 1243 CDD ABC_MTABC3_MDL1_MDL2 997 1236 - -
Ahy20g1077 1243 ProSitePatterns ABC transporters family signature. 1136 1150 IPR017871 GO:0005524
Ahy20g1077 1243 Pfam ABC transporter 1015 1164 IPR003439 GO:0005524
Ahy20g1077 1243 Gene3D - 336 588 IPR027417 -
Ahy20g1077 1243 SMART AAA_5 373 573 IPR003593 -
Ahy20g1077 1243 SMART AAA_5 1024 1210 IPR003593 -
Ahy20g1077 1243 Pfam ABC transporter transmembrane region 672 940 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ahy20g1077 1243 Pfam ABC transporter transmembrane region 22 277 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ahy20g1077 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 311 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ahy20g1077 1243 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 1238 IPR039421 -
Ahy20g1077 1243 SUPERFAMILY ABC transporter transmembrane region 7 325 IPR036640 GO:0005524|GO:0016021
Ahy20g1077 1243 ProSitePatterns ABC transporters family signature. 485 499 IPR017871 GO:0005524
Ahy20g1077 1243 PANTHER OS04G0481700 PROTEIN 11 1238 - -
Ahy20g1077 1243 CDD ABC_6TM_Pgp_ABCB1_D2_like 661 977 - -
Ahy20g1077 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 587 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1077 Ahy-Chr20 16967925 16978743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1077 673 1243 Calmodulin-binding Proteins AT2G36910 37.153 5.03e-111 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1077 K05658 - gmx:100804664 1905.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1077 20 16967925 16978743 Ahy10g0778 10 9902665 9910455 hybridization