Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1071 ATGAGCCATTACTCGCTTCTCCAAACACCCACCACCTCCATCATCACCATCGTCAACGATAACAACAATATAAAACACAATCGTCTTTTCTCTCACACAAAGATCTATTATATTATATGCTCAAGAATGGCATGGAGGGAGCTTGGAAGAAAGAGAATTTATATGAATACTTTTAGAACTTTGAATACATCATCATTTAGGCGTGTTGTAGGATCAAGCTATGGATCTACATATACTACACAGTTTGTTTACGCATCAGCAAGATGCATGCCAGACCTCATCAGCCACTCATCTATAGGAGTGGATGGTTTGTTTAGTGGGACAAAAGAAGGTGGTATACGGTGCTTCCATGCTAGTCCTGCAGTCTGGGCAAGAAGAGGTGATGAGCCATTTGGGTTAAAGACCCCAAAGAAGGAGAAGTACATAAGAAGGGAAGGTAGAAACCAGCCACCTGTTGAAGCTCGATATGTCCCTCGTAATGTGAAAGCACCAAAATCTAATTCTGATAAAACAGTAGAAATCTTTGAAGGCATGACCCTTGATGAACTGGCGAAGCGCACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACAAATGTTGGTGAAAAGTTAGAATCAGAGTTTGAGCCTCTCAGCATGGATATTGTAGAGCTTGCTGCAATGGAGGTTGGGGTCAATGTGAAGAGGTTACATTCGGCTGAGGGTACTGAAATCGTACCTCGTCCTCCGGTTGTAACTGTGATGGGCCATGTTGATCATGGTAAAACTTCTCTTCTTGATGCCTTGCGTCAAACATCAGTGGCAGCCAGAGAGGCTGGTGGCATAACTCAGCATCTAGGTGCCTTTGTGGTGGTCATGCCATCTGGAGCATCAATCACGTTTCTCGACACCCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGCGCAGCAGTCACGGATATAGTAGTGCTAGTTGTTGCCGCAGATGACGGAGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAAAGTACCAATTATAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAGAAAGTGAAACTGCAGCTTGCTTCGGAGGGCTTACTGCTGGAGGAGATGGGTGGTGATGTTCAGGTCATTGAAGTTTCAGCACTTCAAAAATCTGGATTGGATAACCTAGAGGAAGCTTTACTTCTTCAGGCTGAAATGATGGATCTGAAGGCACGAATTGATGGGCCTGCTCAAGCTTATGTGGTAGAAGCAAGGCTTGACAAAGGACGTGGTCCATTGATAACTACCATAGTAAAGGCAGGAACCTTAACTTGCGGTCAGCATGTGGTTGTAGGCTCAGAGTGGGGAAGAATAAGAGCTATTAAAGACATGGCAGGAAGGTTAACTGAACGAGCAACTCCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGCTTGCCAATGTCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCCAGAATGCTGAGTTCTGGTAGGACAAGGAAGTCCGAGGAGAATAGACTTAGGAGGAAATTGAATGAGGACACCCCATCTACTTTGGAATCATCTGAGGAGGTTCCACAGAGGGTTGAGATGCCAGTAATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTTACTGATGCATTAAGAACTTTAAATAGTTCTCAGGTTCTTGTGAATGTTGTTCATGTTGGTGTTGGCCCTATTTCTCAATCTGATGTGGACTTGGCACAAGCTTGTGATGCGTGCATAGTTGGATTCAATATCAAGAGTCCACCTATTGCTCTTAGTCAGGCAGCAACTCGTGCCAGTATCAAGGTGATTCTGCACCGTGTTATTTACCACCTTCTGGAGGACATAGGAAATTTGATAATAGAGAAGGCGCCGGGTACTTTTGAGACCCAGGTAGCTGGTCAGGCAGAGGTGCTGAACATCTTTGAGGTGAAGGGCAGCAAAACAAAGGGACCTGATGTTAAGATTGCCGGGTGTCGGGTTGTAGAAGGTTTTGTGGCAAGGACGGGAACCATGAGGCTTCTGAGGAGTGGGGAAGTTGTGTTTGAAGGGCTTTGTGCATCTCTTAAGCGGGAGAAGCAGGATGTGGACAGTGTGAAGAAGGGTAATGAGTGTGGATTAGTGATCAATGATTGGTATGATTTCAAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTTGTGAGGAAGCCCAAGTTCATAAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2289 0.4504 MSHYSLLQTPTTSIITIVNDNNNIKHNRLFSHTKIYYIICSRMAWRELGRKRIYMNTFRTLNTSSFRRVVGSSYGSTYTTQFVYASARCMPDLISHSSIGVDGLFSGTKEGGIRCFHASPAVWARRGDEPFGLKTPKKEKYIRREGRNQPPVEARYVPRNVKAPKSNSDKTVEIFEGMTLDELAKRTGKSVSSLQDILTNVGEKLESEFEPLSMDIVELAAMEVGVNVKRLHSAEGTEIVPRPPVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAAKVPIIVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDVQVIEVSALQKSGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLITTIVKAGTLTCGQHVVVGSEWGRIRAIKDMAGRLTERATPAMPVEIEGLRGLPMSGDDVIVVHSEERARMLSSGRTRKSEENRLRRKLNEDTPSTLESSEEVPQRVEMPVIVKADVQGTVQAVTDALRTLNSSQVLVNVVHVGVGPISQSDVDLAQACDACIVGFNIKSPPIALSQAATRASIKVILHRVIYHLLEDIGNLIIEKAPGTFETQVAGQAEVLNIFEVKGSKTKGPDVKIAGCRVVEGFVARTGTMRLLRSGEVVFEGLCASLKREKQDVDSVKKGNECGLVINDWYDFKIGDVIQCLEQVVRKPKFIKSESGAVRIEC* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1071 762 MobiDBLite consensus disorder prediction 506 537 - -
Ahy20g1071 762 Gene3D Translation factors 645 747 - -
Ahy20g1071 762 CDD mtIF2_IVc 651 740 - -
Ahy20g1071 762 CDD IF2_mtIF2_II 417 510 IPR044145 -
Ahy20g1071 762 Pfam Elongation factor Tu GTP binding domain 246 402 IPR000795 GO:0003924|GO:0005525
Ahy20g1071 762 Pfam Translation-initiation factor 2 526 633 IPR023115 -
Ahy20g1071 762 TIGRFAM small_GTP: small GTP-binding protein domain 244 397 IPR005225 GO:0005525
Ahy20g1071 762 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 110 753 - -
Ahy20g1071 762 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 110 753 IPR015760 -
Ahy20g1071 762 SUPERFAMILY Translation proteins 415 497 IPR009000 -
Ahy20g1071 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 432 IPR027417 -
Ahy20g1071 762 Hamap Translation initiation factor IF-2 [infB]. 3 748 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Ahy20g1071 762 Gene3D - 539 643 IPR036925 -
Ahy20g1071 762 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 241 411 IPR000795 GO:0003924|GO:0005525
Ahy20g1071 762 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 538 651 IPR036925 -
Ahy20g1071 762 Gene3D Translation factors 414 529 - -
Ahy20g1071 762 CDD IF2_eIF5B 244 408 - -
Ahy20g1071 762 TIGRFAM IF-2: translation initiation factor IF-2 169 745 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Ahy20g1071 762 MobiDBLite consensus disorder prediction 506 529 - -
Ahy20g1071 762 Gene3D - 238 413 IPR027417 -
Ahy20g1071 762 SUPERFAMILY Translation proteins 646 747 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1071 Ahy-Chr20 16634884 16640557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1071 232 726 Eukaryotic Initiation Factors Gene Family AT1G76810 27.305 1.08e-27 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1071 K02519 - gmx:100781314 1131.7