Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1067 ATGGCAGATTGGTTTCTTCTTATGTTCCAGTTCTTGCTTCTTGGCCCAGCTTTAACATCTTCTTCTCCAGTTCAAGATCCTGAATCCGTTGTGCACGAACTACACAAGATTACCAATGATTCCAGGAGAAATTTGGCATACTTTTCTTGCAGCACAGGTAACCCAATCGACGATTGTTGGAGGTGTGATCCCAATTGGGAAAGAAACCGGAAGCGCCTCGCCGACTGCGCCATTGGCTTCGGGAGGCGCGCAATCGGAGGTAGGGATGGAAAATATTACGTGGTCACTAATCCTAGTGACCACGCAATGGACCCCAAGGCAGGTACTCTAAGACATGCTGTGATCCAAGAAGAGCCCTTATGGATAATCTTCAAGCATGACATGTTTATAAAACTAAAAATGGACCTAATTGTAAATTCTCACAAAACAATTGATGGCAGAGGAGCAAATATTCACATTGGTAGAGGACCCTGCATTGAAATAAGGAATAAGTCCAACATCATAATTCATGGCATACATATCCATGATTGTGTGAGAGGTGGTAGTGGCTATGTTAGGGACTCAAATAGTCATTTCTTTTGGAGATCAAGATCTGATGGAGATGGGGTTTTGATATATGGGAGTAGTTATGTTTGGGTGGACCATTGCTCATTTTCAAATTGCTATGATGGGCTTATTGATGTTGTTCATGGGTCAACGGCTGTTACAATTTCAAATAATTATATGACACACCATAATAAAGTTATGCTTTTAGGACACAGTGATTCCAATGAAGAAGAGGACAAGAATATGCAAGTAACTGTGGCATTCAACCATTTTGGAGAAGGGCTTGGAGGAAGAATGCCAAGGTGCAGGTTTGGGTACTTTCATGTGGTGAATAATTATTATACCCATTGGCAACAGTATGCAATAGGAGGAAGTTCCTCCCCAACTATTTTTAGCCAAGGGAACAGATTTGTTGCTCCTCATGATGTTGATCACAAAGAGGTTACGAAACACTTTGGTTCATCAAAAGATGAGTGGAAGAGATGGAATTGGAGATCTGAAGGGGATTTAATGTTGAATGGTGCCTTCTTCACAGAATCTGGAGATGGAGCACCTTTCTTTTATGAGAAGGCATCAAGCATGGAAGGAAGACCAGCCATGTTAGTGACTTTAATGACAGCAGGAGCTGGAGCACTTGCTTGCAAAAATGGACAACTCTGCTAG 1209 0.4202 MADWFLLMFQFLLLGPALTSSSPVQDPESVVHELHKITNDSRRNLAYFSCSTGNPIDDCWRCDPNWERNRKRLADCAIGFGRRAIGGRDGKYYVVTNPSDHAMDPKAGTLRHAVIQEEPLWIIFKHDMFIKLKMDLIVNSHKTIDGRGANIHIGRGPCIEIRNKSNIIIHGIHIHDCVRGGSGYVRDSNSHFFWRSRSDGDGVLIYGSSYVWVDHCSFSNCYDGLIDVVHGSTAVTISNNYMTHHNKVMLLGHSDSNEEEDKNMQVTVAFNHFGEGLGGRMPRCRFGYFHVVNNYYTHWQQYAIGGSSSPTIFSQGNRFVAPHDVDHKEVTKHFGSSKDEWKRWNWRSEGDLMLNGAFFTESGDGAPFFYEKASSMEGRPAMLVTLMTAGAGALACKNGQLC* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1067 402 PANTHER PECTATE LYASE 3 398 - -
Ahy20g1067 402 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Ahy20g1067 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Ahy20g1067 402 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Ahy20g1067 402 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Ahy20g1067 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Ahy20g1067 402 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Ahy20g1067 402 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Ahy20g1067 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Ahy20g1067 402 SUPERFAMILY Pectin lyase-like 36 395 IPR011050 -
Ahy20g1067 402 Pfam Pectate lyase 135 319 IPR002022 -
Ahy20g1067 402 Gene3D - 53 395 IPR012334 -
Ahy20g1067 402 PANTHER PECTATE LYASE 18-RELATED 3 398 IPR045032 GO:0030570
Ahy20g1067 402 SMART amb_all 127 325 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1067 Ahy-Chr20 16482424 16492226 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1067 5 402 Polysaccharide Lyase AT5G63180 66.253 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1067 K01728 - gmx:100801136 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1067 20 16482424 16492226 Ahy10g0766 10 9522849 9529346 hybridization