Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1029 ATGGACAATAATAATGGTTGCTTCTCTTCACCAAGACGTGATGCTTTTCCAGCAGGTCTAAGAGTCCTTGTTGTTGATGATGACCCAACATGGCTTAGGATCCTTGAAAAGATGCTCAAGAAGTGTTCCTATGAAGTGACAACGTGTTGTTTGGCGAGGCATGCTCTACACTTGCTTCGCGAAAGGAAAGACGGGTATGATATAGTGATCAGCGATGTGAACATGCCGGACATGGATGGATTCAAACTTCTAGAGCATGTTGGACTTGAGATGGATCTTCCTGTGATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACACGGAGCATGCGATTATCTGCTTAAGCCTATAAGGATGAAGGAACTGCGAAACATATGGCAGCATGTCTTTAGGAAAAGGATACACGAGGCGAGAGAATTCGAGAGTTTTGAAGGTTTCGAGAGCATTCACCTGATGAGAAACGGATTGGAGCAATGCGATGATGGGAACCTGTTTGCCCTTGAAGACATGACCTCAACTAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAGAGAATTGATAGATCCATCATCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCACCAGAAGTTTGTTAAAGCAGTGAATCAAATTGGATTTGATATTGGTCCAAAGAAAATACTAGATCTCATGAATGTTCCTTGGCTGACTAGAGAAAATGTTGCAAGCCACTTGCAGAAGTATCGCCTTTACCTAAGCCGGCTTCAGAAAGAGAACGATCTGAAGTCTCACTCAATCGGAATGAACTCGGATTTAGCCTCAACAGATCTAGGGAGTCTTGTTGGAGTTCAGAACTCAGGGAGCAAGAAACAAAATGACGTTTCAATTGACAGCTGCAGTTATTCAGAAGGAGCACTGCAACTTCAGAACCTGGAAACCAAAACTCATGAAGGTAGCAGTGATCCAAACGGAACTATTTCTCCGCCTGCCACCACAGAAAAAGGAAGAACTATGATCAGAAACTTTGTTTCCGAGAAAAAGATGAGAAAGAACCAACCTTTTGACTCTCTTGAGCCGGAAGGAAACCACACGGCAGTAATTGATTGCTCCATTCCAACACAATTCTCTTGGAATGAAGTTCCAGAAATTCAACTCAAAGATCACAAGCCACTTGTTCAGTTAGAGGGTAACTTAAGCCACAAGTTTCCAGTAACAGGTAAGAAGCACCAAATCCAAGTTGATCATCAATCACCATCAATTGGTTCGATTAGTTCTCCATCTTTGACAGGGGAGGAGGTCACGGCATGCATCAAAACAAAACCTTTGTGTGCAGATTACAAGTGTGAATATAAGAGTTCTGTGAGTTCGATAGGATCGGCCGTTGACAACAACACGTTCCCTATCGAACCAGGAAGCCTTATGATGAATGATCCATCAACAGCACCAATTTCAACTACAAATTTGGGATTGAAAACACAAGCATCTAACCTCAACAGCATTTCGGATATGGAATTTTGCCAGAGAAACCTACTTTTGGATGCAGTTTCGCTACCCTTGGACGATGATCTGCATTTTAATTGGCTACATGGGGAATGCTCTAACATCAACTTCAGCCTGCAGAACATAGGGTATTATGATCCAGGGCTTATTGCAGAAATTCCAACTCATTACTATGATTCAGCAGCAGATTATTCAGTCATAGATCAAGGTCTATTCATATCATGA 1737 0.4208 MDNNNGCFSSPRRDAFPAGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLARHALHLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFEGFESIHLMRNGLEQCDDGNLFALEDMTSTKKRKDADNKHDDRELIDPSSTKKARVVWSVDLHQKFVKAVNQIGFDIGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDLKSHSIGMNSDLASTDLGSLVGVQNSGSKKQNDVSIDSCSYSEGALQLQNLETKTHEGSSDPNGTISPPATTEKGRTMIRNFVSEKKMRKNQPFDSLEPEGNHTAVIDCSIPTQFSWNEVPEIQLKDHKPLVQLEGNLSHKFPVTGKKHQIQVDHQSPSIGSISSPSLTGEEVTACIKTKPLCADYKCEYKSSVSSIGSAVDNNTFPIEPGSLMMNDPSTAPISTTNLGLKTQASNLNSISDMEFCQRNLLLDAVSLPLDDDLHFNWLHGECSNINFSLQNIGYYDPGLIAEIPTHYYDSAADYSVIDQGLFIS* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1029 578 Pfam Myb-like DNA-binding domain 204 253 IPR001005 -
Ahy20g1029 578 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 254 IPR006447 GO:0003677
Ahy20g1029 578 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 555 - -
Ahy20g1029 578 SUPERFAMILY Homeodomain-like 200 258 IPR009057 -
Ahy20g1029 578 Gene3D - 20 201 - -
Ahy20g1029 578 Pfam Response regulator receiver domain 22 131 IPR001789 GO:0000160
Ahy20g1029 578 Gene3D - 202 260 - -
Ahy20g1029 578 SMART REC_2 20 132 IPR001789 GO:0000160
Ahy20g1029 578 CDD REC_typeB_ARR-like 22 136 - -
Ahy20g1029 578 MobiDBLite consensus disorder prediction 317 336 - -
Ahy20g1029 578 SUPERFAMILY CheY-like 19 148 IPR011006 -
Ahy20g1029 578 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 555 IPR045279 GO:0009736
Ahy20g1029 578 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1029 Ahy-Chr20 15453851 15457470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1029 14 315 Response Regulator Gene Family AT2G25180 49.346 4.23e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ahy20g1029 Response_reg 3.00E-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1029 - K14491 gmx:100797421 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1029 20 15453851 15457470 Ahy20g1029 20 15453851 15457470 ECH
Ahy20g1029 20 15453851 15457470 Ahy10g0741 10 8827616 8830743 hybridization
Ahy20g1029 20 15453851 15457470 Ahy13g4440 13 144495392 144498212 PCT
Ahy13g4440 13 144495392 144498212 Ahy20g1029 20 15453851 15457470 PCT