Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0999 ATGGAAGAGGAAATCAAGTCAGAATTCAGAAAAGCCGGGTTCAACCTTGAGGAAGAAGAAGAAATACTGAACAAGTGTATGACTTTCTGCATCAACTACAGCCTCAGCCCTGCAGATCTCGTCTCAAACTGGGAGGTTTATTACCTCAACAGACAACTGAATGAGCCAACAGTGCAAAATGCTGAAATGGATGGCTTTTTGATGCACCTGCAGACTAACAAGAAAGAAGAAGTTATAAAGGAGGAATCTAATTTGCATAGTTACTCTATCAGAGATGTAGAAATGGTCTTAAATAATGATGATGATGCTAAGTTTAGTACTCCTGGGACTCCAACAAATAATGATGAACATCTTCGTTCACCTGCACACGAAGCAATGTCTCTAACACATGGGAATATTTTATCTTCTGGAAAACCAACTGAGCTGGTGACACCCTTTTCAAAGCGAACTGATAGGTTTGCTGTGAAATTTAGCATCAACACAGTGCCTGATATAGAGAATGAAATACAAGTGCCGAATCATGAGATCGATGAGGATGATGTTATTAGGAAAGTTATGCCTTGTAAAAGGTGTTCATTGGTGGTTCATGGATCAGGGCCTAAACGTGGTTGCAGATTCATGCATGATAGGACAGAGGATAGGATGAATGTAATAGAAAATCGAATTCGCAAACATACAAGGGCCCTTGTTGCTTCTGGGATTTATGGAGAACCAACAGACCCTACAATTGCTTCACAGAGAAGCATTTTTGCTGTCGGTATGGTTTGCTGTGATGCAGAAGGCCGTCTAAATGACAAGTCTGTCATGCTGCAGGGCAGTGTTGAACATTCTGGAGGAGAATGTGTTCGTCTGGACTTGCAACGCTTAAGCCATTTTTCAATTTTCCCTGGGCAGGTTGTTGGTATTGAAGGGCATAATCCTAGTGGGCATTGCTTAGTTGCATCTAAATTGGTAGATTCTATACCACCTACCTCTGTTGCTGATGATAAGGATTTGAATCCAGCAAAGAAGCTAGCTATTGATAAAAGTCAACCAATTGATATTACTTCTAAAAAGACAGAGTTGTCCATGATTATTGCAGCAGGCCCTTTTACAACAACAGACAATTTATTTTTTGAGCCCCTTGTAGAATTGTTAGCATATGCAAAGCGAAGACAGCCACAGTTACTCGTATTGTTGGGACCATTTGTTGATTCTGAACACTCCAACATTAAGAAAGGAACCGTTGACAGAACCTTTGATGAAATATTTCATAACGACATCCTGAGCAAGTTACAAGATTATGTAGAATGTATGGGTGCTGCTGCACGTGTTCTTCTTGTACCATCTATACGAGATGCGAACCATGATTTTGTTTTCCCTCAGCCTGAACTGGATATCAATCTTCCTGATCTCAAATCTCAGATAATCAGTCTCACTAATCCTGGAATCTTTGAGGCAAACGAGGTCAAAGTTGGTTGCTGCAGTGTAGATATTCTCAAGCAGATCAGTGGGGAAGAGATATCACGAACTGCGCCAGATGGACAACCTACTGATCGCTTGAGTAGGCTTGCAAATCATATTCTTAGCCAGCAAAGCTTTTATCCACTTTATCCGCCGGCAGAAGGTGTTCCTTTGGATTTTTCTCTTGCACCAGAAGCCCTTCAACTCCCGTTGGTTCCAGATCTTCTTATCTTGCCTTCGGATATCAAGTACTTTGTCAAGGTGCTTAATGTGGGAAGTGAAGAGACAAACTGCAAGAAATGCATTGCTGTGAATCCAGGAAGACTAACAAAGGGAGAAGGAGGGGGTACTTTTGTAGAGCTTGATTATCGTGGTGGTTCCGACAAAATTAATGCATCAGTTATTGGCATATGA 1857 0.413 MEEEIKSEFRKAGFNLEEEEEILNKCMTFCINYSLSPADLVSNWEVYYLNRQLNEPTVQNAEMDGFLMHLQTNKKEEVIKEESNLHSYSIRDVEMVLNNDDDAKFSTPGTPTNNDEHLRSPAHEAMSLTHGNILSSGKPTELVTPFSKRTDRFAVKFSINTVPDIENEIQVPNHEIDEDDVIRKVMPCKRCSLVVHGSGPKRGCRFMHDRTEDRMNVIENRIRKHTRALVASGIYGEPTDPTIASQRSIFAVGMVCCDAEGRLNDKSVMLQGSVEHSGGECVRLDLQRLSHFSIFPGQVVGIEGHNPSGHCLVASKLVDSIPPTSVADDKDLNPAKKLAIDKSQPIDITSKKTELSMIIAAGPFTTTDNLFFEPLVELLAYAKRRQPQLLVLLGPFVDSEHSNIKKGTVDRTFDEIFHNDILSKLQDYVECMGAAARVLLVPSIRDANHDFVFPQPELDINLPDLKSQIISLTNPGIFEANEVKVGCCSVDILKQISGEEISRTAPDGQPTDRLSRLANHILSQQSFYPLYPPAEGVPLDFSLAPEALQLPLVPDLLILPSDIKYFVKVLNVGSEETNCKKCIAVNPGRLTKGEGGGTFVELDYRGGSDKINASVIGI* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0999 618 Coils Coil 208 228 - -
Ahy20g0999 618 PIRSF DNA_pol_alpha_2 1 612 IPR016722 -
Ahy20g0999 618 Pfam DNA polymerase alpha/epsilon subunit B 358 568 IPR007185 GO:0003677|GO:0006260
Ahy20g0999 618 Pfam DNA polymerase alpha subunit B N-terminal 21 225 IPR013627 -
Ahy20g0999 618 Gene3D - 1 74 IPR043034 -
Ahy20g0999 618 Gene3D - 508 614 - -
Ahy20g0999 618 Gene3D - 339 501 - -
Ahy20g0999 618 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 615 IPR016722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0999 Ahy-Chr20 14596057 14601852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0999 2 618 Core DNA Replication Machinery Family AT1G67630 58.226 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0999 K02321 - gmx:100795306 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0999 20 14596057 14601852 Ahy10g0718 10 8136614 8142040 hybridization