Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0979 ATGATGGATGTTGCTGAGCTTGAAGAAAATCTTTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAGGACTCTTTCTGCAATATATTGTAAAATATTGACAATATTTCCTTCTCTAGAAGCAGCTAAGCCTAGGAGCAAATCTGGAATACAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGTCGAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCAATAACTGGCGACGCCGTACTTCAAAAATTTGAAAAGGCTAAGTCTGCACTTGTTGACAGTCTTAAACTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGGTTGAGAAAATTGTGGATGAACTTGCAAGTACGGTTTTTGCAATTGACCCCTCAGAAAAACAAGTTGGCGACGATTTAATTGCATTGCTTCAGCAGGGAAAGAAGCTTGACAACTCTAATGACAGTAGTGAACTTGAATGTTTTCATCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTACTGAACGAAGAGCTCTCAAAAAACTCATCGAAAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACACCTCATGAGGAAATATTCTAAGTTGTTTAGAAGTGAGTTCTCAGATGATAATGATTCTCAGGGCTCCCAACCCTGTTCACCTACTGTTAATGGATATGTTGAGGATGGTGTTCAGACTCAAGCGTTTGATAGAGTGTTTTCAAAACTTAGTTCCATTAACTTAAAGCCGAATAATAGAAAATCAGGCCCGATGCCCCCCCCTGAAGAGTTGAGGTGTCCGATATCTCTGCAACTCATGAGTGATCCTGTTATAATTGCTTCGGGTCAAACATACGAAAGGGCTTGTATAGAAAAATGGTTCAGTGATGGGCATAACACCTGCCCAAAGACTCAACAGAAACTTCCACATCTTTTATTGACTCCTAATTACAATGTCAAGAATCTTGTGGCTAGTTGGTGCGCACAGAATGGAATTCCTATTCCTGAAGGCCCTCCCGAATCTCTTGATTTTAACTATTGGAGATTGGCTTTATCAGATACCGATTCCACAAATTCAAAATCTGTTAACAGTGTAAATTCTTGCAAGTTGAAAGGTGTGAAAGTGGTTCCAGTAGAAGAGAGCAGCATGTCAGAGCAAACTGGCGTAGCTGGAGCTGAAAGTGTGTCTACACAAGAGGACGATAATGAACAGTATCTTAGTTTTCTGAAAGTCTTAACAGAAGGGAACGATTTACAGGGGAAGTGTAAGGTTGTACAAAGGTTAAGGATGTTGCTAAGGGATGATGAGGACGCCAGGACATTTATGGGTGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTCCAATCAGCTTTGCATGAAGGAAATGCAATGGATCAAGAAAATGGAGCTATGGCCCTGTTCAACCTTGCTGTGAACAATGACAGAAACAAGGAAATGATGATATCAGCCGGAGTCTTATCCTTGTTGGACGAAATGATCTATAAACCTACTTGCTATGGCTGTGCAACTGCCCTCTATCTAAATCTCTCTTGCCTTGAAGAAGTCAAGCCTATGATTGGTTCGGGTCAGGCTGTCCCATTCCTAGTCAAGATTCTTAAATCCAGCTCTGATGTTCAATGCAAGCTAGATTCGCTCCACACACTCTATAATCTTTCTACCGTACCCACCAACATTCCATACCTCCTTTCATCTGGAATCATTGTTGGCTTGCAATCCCAGCTTGTAGGCCAGGGTGATAGTGTGTGGACCGAAAAATGCATAGCTGTATTGATAAATTTGGCGGTTTCTCAACTGGGTAGAGAGGAAATGGTGTCATCTCCAGCAATCATAAGCACATTGGCATCGATACTCGACACTGGTGAGCTCCTAGAGCAAGAGCAAGCCGTCGCATGTCTCCTAATTTTGTGTAACCGGAGCAAGAAATGTTGCGAGATGGTCCTTCAAGAAGGGGTCATCCCTGCCTTGGTCTCAATATCGGTGAATGGGACGTCAAGAGGCAGAGAAAAATCTCAAAAGCTGTTGATGCTCTTCCGAGAGCAACGGCAAGAAGAGCATTCCCCGACCAAGCCACAAGGCCGACCAGAAACCAGCAATTCATCTATGCCTAAGCCTGAGATGAAACCACTATGCAAATCTACATCTAGGAGAAAGGTGGGGAAGGCTTTAAGCTTTCTGTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAG 2283 0.4262 MMDVAELEENLFAASDAKLHGEMCRTLSAIYCKILTIFPSLEAAKPRSKSGIQALCSLHVALEKSKNVLQHCSECSKLYLAITGDAVLQKFEKAKSALVDSLKLVEDIVPQSIGCQVEKIVDELASTVFAIDPSEKQVGDDLIALLQQGKKLDNSNDSSELECFHQAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVNGYVEDGVQTQAFDRVFSKLSSINLKPNNRKSGPMPPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFSDGHNTCPKTQQKLPHLLLTPNYNVKNLVASWCAQNGIPIPEGPPESLDFNYWRLALSDTDSTNSKSVNSVNSCKLKGVKVVPVEESSMSEQTGVAGAESVSTQEDDNEQYLSFLKVLTEGNDLQGKCKVVQRLRMLLRDDEDARTFMGANGFVEALMQFLQSALHEGNAMDQENGAMALFNLAVNNDRNKEMMISAGVLSLLDEMIYKPTCYGCATALYLNLSCLEEVKPMIGSGQAVPFLVKILKSSSDVQCKLDSLHTLYNLSTVPTNIPYLLSSGIIVGLQSQLVGQGDSVWTEKCIAVLINLAVSQLGREEMVSSPAIISTLASILDTGELLEQEQAVACLLILCNRSKKCCEMVLQEGVIPALVSISVNGTSRGREKSQKLLMLFREQRQEEHSPTKPQGRPETSNSSMPKPEMKPLCKSTSRRKVGKALSFLWKSKSYSVYQC* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0979 760 MobiDBLite consensus disorder prediction 703 741 - -
Ahy20g0979 760 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Ahy20g0979 760 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 508 IPR000225 GO:0005515
Ahy20g0979 760 Gene3D - 419 600 IPR011989 -
Ahy20g0979 760 SUPERFAMILY ARM repeat 431 693 IPR016024 -
Ahy20g0979 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 349 IPR013083 -
Ahy20g0979 760 SMART arm_5 451 495 IPR000225 GO:0005515
Ahy20g0979 760 SMART arm_5 535 577 IPR000225 GO:0005515
Ahy20g0979 760 CDD RING-Ubox_PUB 280 322 IPR045210 -
Ahy20g0979 760 PANTHER U BOX DOMAIN-CONTAINING 2 747 - -
Ahy20g0979 760 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Ahy20g0979 760 Coils Coil 176 196 - -
Ahy20g0979 760 Gene3D - 601 699 IPR011989 -
Ahy20g0979 760 Pfam U-box domain 277 346 IPR003613 GO:0004842|GO:0016567
Ahy20g0979 760 SUPERFAMILY RING/U-box 268 351 - -
Ahy20g0979 760 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0979 Ahy-Chr20 14162523 14168379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0979 2 759 U-box Gene Family AT1G24330 65.935 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0979 - - adu:107478647 1281.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0979 20 14162523 14168379 Ahy20g0979 20 14162523 14168379 ECH
Ahy20g0979 20 14162523 14168379 Ahy13g4464 13 144753016 144757620 PCT
Ahy20g0979 20 14162523 14168379 Ahy3g4184 3 141768570 141773161 PCT
Ahy13g4464 13 144753016 144757620 Ahy20g0979 20 14162523 14168379 PCT
Ahy3g4184 3 141768570 141773161 Ahy20g0979 20 14162523 14168379 PCT