Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0925 ATGAAACTGTTGAATATGCTTATTGAAATTGTTAAGCTGAATATCCTTGCTGACTTAATGTCTGCTGCGAATACACCATCAGAAACACCATCTTCGCAAGAACAAGGATCAACTGCTGATGCATCAATCGGAACCCAAAAAAACAATAATAGAGCAAAAAATGATCTTGCATGGGTCATTCTTATTAGGGGTGGAGGAATTCATCGGTTTAAGCTTCATTTGGCTGGAAAAGGAGGAGATGTTGAGTCTTGTCGAAAGGTGCCAGCTGCAGTGAGACACCAATTCCATGAAAATCAATTGGATTTGGAAGATGATCGGAAGGATGATGGAGCTAATAATTCTGTGGAAAATGCAAATCAAAATGAAACCAATCAGGATGTAGCTCCACATTTGAAGAAGTCCAAGAAGTTATCTTTTTCACCATCACTAAAACATAGATACTTAAAGGTTTCCTATGGAGAGCTACATCAAGCAACAAATGGATTTTCTTCATCCAATTTAGTTGACACGGGAAGCTCTGGCTCTGTGTATAGAGAAACCCTTGTCTATTTTGAGAGACCTGTTGCTGTGAAAGTGTTGAATCTTCAAACAGGTGGGGCATCGAAGAGTTTCATGGCCGAATGTAAAGCTCTAGGAATAATTAAACACAGAAACCTTCTTAGCCTATTGGCTTCTTGTTCAAGTGTTAACTACAAAGAGAATGATTTTAAGGCCATAGTGTTTGAGTTCATGTCTAATAGGAGCCTAAAAACTTTGTTGTACAACACTATTGAAGATAGCGAGTCCACAAATCTGAGTCTGAACCTTATGCAAAGGGTAAATATTGCTCTTGATATAGCTTTTGCATTGGATTATATTCACAATGATTCAGGAGTTGTAATTCATTGTGATATTAAGCCTAGCAATATGCTTCTTGATGATGATATTGTTGCCCGCTTGGGAGACTTTGGTCTAGCTAGACTTATTTCAAGGGGACAGAAGCTATTCTACCAGTAA 996 0.3815 MKLLNMLIEIVKLNILADLMSAANTPSETPSSQEQGSTADASIGTQKNNNRAKNDLAWVILIRGGGIHRFKLHLAGKGGDVESCRKVPAAVRHQFHENQLDLEDDRKDDGANNSVENANQNETNQDVAPHLKKSKKLSFSPSLKHRYLKVSYGELHQATNGFSSSNLVDTGSSGSVYRETLVYFERPVAVKVLNLQTGGASKSFMAECKALGIIKHRNLLSLLASCSSVNYKENDFKAIVFEFMSNRSLKTLLYNTIEDSESTNLSLNLMQRVNIALDIAFALDYIHNDSGVVIHCDIKPSNMLLDDDIVARLGDFGLARLISRGQKLFYQ* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0925 331 Pfam Protein kinase domain 169 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g0925 331 SMART serkin_6 162 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g0925 331 ProSiteProfiles Protein kinase domain profile. 162 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g0925 331 MobiDBLite consensus disorder prediction 113 127 - -
Ahy20g0925 331 Gene3D Transferase(Phosphotransferase) domain 1 244 328 - -
Ahy20g0925 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Ahy20g0925 331 MobiDBLite consensus disorder prediction 96 134 - -
Ahy20g0925 331 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 132 323 - -
Ahy20g0925 331 SUPERFAMILY Protein kinase-like (PK-like) 137 327 IPR011009 -
Ahy20g0925 331 MobiDBLite consensus disorder prediction 23 48 - -
Ahy20g0925 331 PANTHER LRR RECEPTOR-LIKE KINASE 132 323 - -
Ahy20g0925 331 MobiDBLite consensus disorder prediction 96 112 - -
Ahy20g0925 331 Gene3D Phosphorylase Kinase; domain 1 142 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0925 Ahy-Chr20 12214208 12219396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0925 149 322 Receptor kinase-like Gene Family AT3G47570 52.273 2.12e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ahy20g0925 Pkinase 2.20E-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0925 - - aip:107620136 647.506