LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy20g0865	ATGGAGGTACAGGGTAAGCGCTTGAAGCCACGCCTCGATCGCCGCAACGCCATGAAGAACATCACTTACAAAGTCTCCTCTTCTTTCACCCCTTCCTCCATTGACCTTCCTCCTTCTTTGAACCACCAAAAAAGCTTCAGGGTCAAGGGCATCGACGACGGCGAGTTTGACCTCATCTTCCGCACCCTCGGTCTCTCTGGACCCGAAGACTTTTCTATTCCAACCGCAGCTTGGGAAAAAGCCCAAAGGTCTCGCCTTTCTCCTTCCCCTGTCACCACCAAGAACATCATCAACCTCCAGGTTGTTGATGAAGCACATGAACACCAAGCCCCACTTCCAATTCCACCTAAAACTGAATCTGGGGTTGGCTTCAATGTCGATGTTAGGCTGAAAAATCTAAGCTTTCAGCAACTTGATGGTGGGGGCATCAAGGGTGTTAGGCCTCCACCGGTGATGTTGCGGCCACCATTTGATGATGATGACAATGATGTTGATGTTGTGGATTCACCTTCGAGGGAACAAGATGAAAGGTACTTTGAAGAGAGTGGGGACCTTGATGTTTCTGATGATGATGATAGTGATGTTGCTAGTGGTGAGGTTTCCGATGATGTTGTTGGCGAGTCAAATGTTCATAACGTGTCTCCAAATGGTTCTTTTAGGAGAACGTTTATGTCGTGGCAAAAGGGCGAGATTCTTGGTAAAGGCTCATTTGGAACGGTTTATGAAGGCTTTACCGATGATGGATTCTTTTTTGCGGTGAAGGAGGTATCTTTGTTGGATGAAGGAAGCCAGGGCAAACAGAGCATTTTCCAACTTCAACAGGAAATATATCTTCTGAGTCAATTTGAACATGAGAACATAGTTAGATATCTTGGCACAGACAAGGACAATAACATGCTATACATCTTTCTCGAGCTTGTAACAAAAGGATCATTGGCAAGTCTTTATAGAAAGTATCGTTTAAAGGATTCTCAGGTTTCGGCATACACAAGACAGATTCTAAGTGGTTTGAAGTATCTCCATGATCGTAACGTGGTTCACAGGGACATCAAGTGTGCTAATATATTGGTTGATGCAAATGGATCCGTGAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACTAAATTAAACGATGTTAAATCAAGCAAAGGTTCTCCATATTGGATGGCCCCTGAGGTTGTTAACTTACGAAACCGTGGTTATGGACTAGCAGCTGATATATGGAGCTTAGGATGTACAGTTTTGGAGATGTTAACACGGCAACCTCCTTATTCTCATTTAGAAGGAATGCAAGCGCTATTTCGGATTGGAAGGGGTGAAGCACCTCCAGTTCCTGAAACATTATCAAAAGATGCAAGAGATTTCATAATGAAATGCTTACAAGTGAATCCAAGTAAAAGGCCAACTGCTACTCAGCTGTTGGATCATCCATTTGTAAAGAGGCCACTTCTATCTCCCATAAGTCTTGTCTCTCCACGCATTAATCTTCTTCTGTCTTAA	1500	0.4393	MEVQGKRLKPRLDRRNAMKNITYKVSSSFTPSSIDLPPSLNHQKSFRVKGIDDGEFDLIFRTLGLSGPEDFSIPTAAWEKAQRSRLSPSPVTTKNIINLQVVDEAHEHQAPLPIPPKTESGVGFNVDVRLKNLSFQQLDGGGIKGVRPPPVMLRPPFDDDDNDVDVVDSPSREQDERYFEESGDLDVSDDDDSDVASGEVSDDVVGESNVHNVSPNGSFRRTFMSWQKGEILGKGSFGTVYEGFTDDGFFFAVKEVSLLDEGSQGKQSIFQLQQEIYLLSQFEHENIVRYLGTDKDNNMLYIFLELVTKGSLASLYRKYRLKDSQVSAYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSHLEGMQALFRIGRGEAPPVPETLSKDARDFIMKCLQVNPSKRPTATQLLDHPFVKRPLLSPISLVSPRINLLLS*	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy20g0865	499	ProSiteProfiles	Protein kinase domain profile.	226	479	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy20g0865	499	MobiDBLite	consensus disorder prediction	167	181	-	-
	Ahy20g0865	499	MobiDBLite	consensus disorder prediction	144	211	-	-
	Ahy20g0865	499	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	5	97	-	-
	Ahy20g0865	499	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	140	481	-	-
	Ahy20g0865	499	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	345	357	IPR008271	GO:0004672\|GO:0006468
	Ahy20g0865	499	Gene3D	Transferase(Phosphotransferase) domain 1	224	491	-	-
	Ahy20g0865	499	PANTHER	SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	5	97	-	-
	Ahy20g0865	499	PRINTS	Tyrosine kinase catalytic domain signature	448	470	IPR001245	GO:0004672\|GO:0006468
	Ahy20g0865	499	PRINTS	Tyrosine kinase catalytic domain signature	304	317	IPR001245	GO:0004672\|GO:0006468
	Ahy20g0865	499	PRINTS	Tyrosine kinase catalytic domain signature	339	357	IPR001245	GO:0004672\|GO:0006468
	Ahy20g0865	499	PRINTS	Tyrosine kinase catalytic domain signature	405	427	IPR001245	GO:0004672\|GO:0006468
	Ahy20g0865	499	PANTHER	SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	140	481	-	-
	Ahy20g0865	499	MobiDBLite	consensus disorder prediction	182	198	-	-
	Ahy20g0865	499	SUPERFAMILY	Protein kinase-like (PK-like)	226	488	IPR011009	-
	Ahy20g0865	499	SMART	serkin_6	226	479	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy20g0865	499	Pfam	Protein kinase domain	227	479	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy20g0865	499	ProSitePatterns	Protein kinases ATP-binding region signature.	232	254	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy20g0865	Ahy-Chr20	11120549	11123244	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy20g0865	11	83	MAP Kinase Kinase Kinase	AT4G08500	35.632	2.90e-07	51.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Ahy20g0865		Pkinase	2.40E-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy20g0865	-		K13414	gmx:100806902	610.912

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy20g0865	20	11120549	11123244	Ahy20g0865	20	11120549	11123244	ECH
	Ahy20g0865	20	11120549	11123244	Ahy10g0599	10	6001191	6003862	hybridization
	Ahy13g4199	13	141478400	141508016	Ahy20g0865	20	11120549	11123244	PCT
	Ahy3g3928	3	138628340	138632598	Ahy20g0865	20	11120549	11123244	PCT