Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0854 ATGTCATTCCGAAGCATAGTTCGGGATGTGAGGGATAGTATTGGGAGCTTATCTAGGCGCAGTTTTGATGTTAGGCTGACCGGCCATCATAGAGGAAAATCTCATGGATCGGTACAGGATTTGCATGACCAGCCTCTAGTAATTCAAAATAGTCGCTGGGCAAGCTTACCCCCAGAACTACTGTATGATGTCATTAGACGGCTGGAGGAGAGTGAGAACACATGGCCTGCTCGAAAGCACGTTGTTGCATGTTCTGCAGTTTGCCAGTCTTGGAGGAGGATGTGCAAGGAAATTGTTAAGAGCCCTGAGTTCTGTGGCAAACTTACATTTCCTGTGTCCCTGAAGCAGCCTGGGCCACGAGATGGAATTATTCAGTGTTTCATCAAAAGAGATAAATCTAATTCAACATATCACCTATTCCTCTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGATGCGGAGAACTACTTACACAGAGTATGTTATTTCTATGGATGCTGACAACATCTCAAGATCAAGTAACACATACATTGGAAAGCTGCGATCAAACTTCATTGGAACGAAATTCATTATATTCGATACACAGCCTCCATATTCCTCTGCCCATATATGCCCTCCTGAAGGAACTGGGAGAACGAGCCGCAGATTTTATTCCAAAAAGGTCTCTCCAAAGGTTCCATCTGGAAGTTACAACATAGCTCAGGTAACATATGAATTAAATGTCCTTGGGACACGGGGCCCAAGGAAGATGCACTGCATCATGCATTCAATACCGGCCGCAGCACTTGACGCCGGCGGCAGTGTTCCTGGCCAACCAGAGCTGCTCCCCCGTTCCCTGGAGGACTCATTTCGGAGCATCTCATTTTCCAAGTCTCTAGATCACTCTATTGAGTTCAGCAGCTCACGATTTTCTGATATCGGTGGATCTGTTGCCAATGAGGATGATGAGGGCAAGATAAGACCCTTGGTTCTTAAAAACAAGCCTCCAAGATGGCATGAACAATTACAATGTTGGTGCCTCAATTTCCGGGGAAGGGTGACAGTTGCATCTGTTAAGAACTTTCAGTTGATTGCCGCCACCCAGCCTGCTGCCGGTGTGCCCACGCCATCTCAACCAACTCCACCGGATCACGACAAGATTATCCTGCAGTTCGGCAAAGTTGGGAAAGATATGTTCACCATGGATTACCGGTATCCCCTATCAGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCCTGTGAATAG 1290 0.4636 MSFRSIVRDVRDSIGSLSRRSFDVRLTGHHRGKSHGSVQDLHDQPLVIQNSRWASLPPELLYDVIRRLEESENTWPARKHVVACSAVCQSWRRMCKEIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNSTYHLFLCLSPALLVENGKFLLSAKRMRRTTYTEYVISMDADNISRSSNTYIGKLRSNFIGTKFIIFDTQPPYSSAHICPPEGTGRTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPAAALDAGGSVPGQPELLPRSLEDSFRSISFSKSLDHSIEFSSSRFSDIGGSVANEDDEGKIRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGVPTPSQPTPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0854 429 Pfam F-box domain 53 100 IPR001810 GO:0005515
Ahy20g0854 429 Gene3D - 48 100 - -
Ahy20g0854 429 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Ahy20g0854 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Ahy20g0854 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Ahy20g0854 429 PRINTS Tubby superfamily signature 333 350 IPR000007 -
Ahy20g0854 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Ahy20g0854 429 PRINTS Tubby superfamily signature 351 367 IPR000007 -
Ahy20g0854 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Ahy20g0854 429 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 429 - -
Ahy20g0854 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
Ahy20g0854 429 Pfam Tub family 114 424 IPR000007 -
Ahy20g0854 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Ahy20g0854 429 ProSitePatterns Tub family signature 1. 351 364 IPR018066 -
Ahy20g0854 429 Gene3D Tubby Protein; Chain A 112 423 IPR025659 -
Ahy20g0854 429 PANTHER TUBBY-RELATED 1 429 - -
Ahy20g0854 429 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0854 Ahy-Chr20 11007761 11011544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0854 1 429 TUB Transcription Factor Family AT1G76900 70.043 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ahy20g0854 Tub 1.10E-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0854 K19600 - gmx:100814578 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0854 20 11007761 11011544 Ahy20g0854 20 11007761 11011544 ECH
Ahy20g0854 20 11007761 11011544 Ahy10g0584 10 5835073 5838825 hybridization