Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0845 ATGGTTGGAAGTGGCCATTTGGGCGCCAACGGAACAGTTGAACCATTGCCCGAGGATTTTGATGCGTCAGCTGTGATCAAAGAACCTGTGCCACCCACAGTTGCAGAAAGTGAGAACGTGAAAAGAGCTATTGTACTGGGAAAAAATGTTCACACACTGTGTCTAGAAGTTACAGAACCTGATGCAGATGATGAGATTACTGGGGAAAGGGATGCTTACATGGCAAGTGTATTGTCCAAATACAAAAAATCATTGACTGAAAGGACAAAACATCATTTAGGTTACCCCTATAATTTGGATTTCGACTACGGTGCACTCTCTCAACTTCAGCACTTCTCCATAAACAACCTGGGAGATCCATTCATTGAAAGCAATTATGGAGTCCACTCCCGGCAGTTTGAAGTTGGTGTTTTGGACTGGTTTGCCCGGTTATGGGAAATAGAGAAAGATGAGTACTGGGGCTATATGACAAACTGTGGTACTGAGGGCAATCTCCATGGCATCCTAGTTGGGAGAGAGGTCCTTCCGGATGGGATTTTGTACGCCTCACAAGAATCACATTATTCTGTATTTAAAGCTGCACGTATGTACAGAATGGATTGTGTGAAGATTGCAACTCTTCATACCGGAGAGATTGATTGTAATGATTTTAAGGCCAAGCTGCTTCTTCACAAAGATAAGCCAGCTATTGTAAATGTGAACATAGGTACAACTGTCAAAGGAGCAGTGGATGATCTTGATCTGGTGATAAAGACACTTGAAGATATTGGATTTTCACGTGACAAATTCTACATCCATTGTGATGGGGCCTTGTTTGGTCTCATGATGCCTTTTGTGAAACTTGCACCAAAAGTTTCTTTTAAGAAGCCCATTGGTAGTGTTAGTGTTTCTGGCCACAAATTTGTGGGGTGCCCAATGCCTTGTGGTGTTCAGATAACAAGATTGGAGCATATCAATGTTCTTTCCAATAATGTAGAATACCTTGCTTCTAGGGATGCCACAATCATGGGTAGCCGGAATGGCCATGCTCCCATATTCCTTTGGTATACGCTTAACCGGAAAGGATACAGAGGTTTCCAGAAAGAAGTGCAGAAATGCCTGAGGAATGCACACTACTTCAAGGACCGCCTTAGGGAGGCCGGAGTTGGTGCAATGCTTAATGAGCTGAGCAGCACAGTTGTGTTTGAGAGGCCACATGATGAGGAGTTTGTACGGAAGTGGCAGTTGGCATGCCAGGGAAACATAGCACATGTGGTGGTGATGCCAAATGTCACTAAGGGTAAGCTTGATGATTTTCTGAACGAGCTTGTGGAGAAGCGCGCTCAATGGTTCAAAGATGGCAAGTTTCAACAATATTGCATTGCCTCAGAAGTGGGTGAAACCTGTTGTCTTTGCCCTTTGCACAAGGGCAAGTGA 1416 0.4414 MVGSGHLGANGTVEPLPEDFDASAVIKEPVPPTVAESENVKRAIVLGKNVHTLCLEVTEPDADDEITGERDAYMASVLSKYKKSLTERTKHHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKDEYWGYMTNCGTEGNLHGILVGREVLPDGILYASQESHYSVFKAARMYRMDCVKIATLHTGEIDCNDFKAKLLLHKDKPAIVNVNIGTTVKGAVDDLDLVIKTLEDIGFSRDKFYIHCDGALFGLMMPFVKLAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINVLSNNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYFKDRLREAGVGAMLNELSSTVVFERPHDEEFVRKWQLACQGNIAHVVVMPNVTKGKLDDFLNELVEKRAQWFKDGKFQQYCIASEVGETCCLCPLHKGK* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0845 471 Gene3D Aspartate Aminotransferase, domain 1 352 440 IPR015422 GO:0003824
Ahy20g0845 471 Gene3D - 107 351 IPR015421 GO:0003824
Ahy20g0845 471 PANTHER SERINE DECARBOXYLASE 7 469 - -
Ahy20g0845 471 PANTHER - 7 469 - -
Ahy20g0845 471 Pfam Pyridoxal-dependent decarboxylase conserved domain 179 392 IPR002129 GO:0016830|GO:0019752|GO:0030170
Ahy20g0845 471 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 293 314 IPR021115 GO:0016831
Ahy20g0845 471 SUPERFAMILY PLP-dependent transferases 87 443 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0845 Ahy-Chr20 10907388 10913860 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0845 20 10907388 10913860 Ahy10g0576 10 5760947 5767507 hybridization
Ahy13g4179 13 141296538 141298402 Ahy20g0845 20 10907388 10913860 PCT
Ahy20g0845 20 10907388 10913860 Ahy13g4179 13 141296538 141298402 PCT