Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0798 ATGGCCACCGCCACTGCAGCTACCTCGCAGCTGCCGGCGCCGCCACCGCAGCAGCAATTTCTCAACTTAGAATCCCTGGCTCGGATAGACACTACAACTCTCTCACAGTCGGAGCTCCATGCCCTGTCTCTCTCCTCCCTCTCCGCCTTCGATCTCCACTCCACTCGTCGCCACCTCGTTACTCCCAAAATCGATCCGTCTCTCTTCAACGAGAGCGCCGGATCTCGCCGCCAGACATACTCCCGTCCTCGCCGCCCCGAGTCCTCTCCCACCGGCCGCCGACGCCGTGTTGCCGGCCTCCTCCCCGCCGCTAAGCTACCTTCTCTCCCTTCCGATGACCTTGGAAATGCCGAGAACCGTGTAATAATCGATTATCTGAAACAGTTTATCAGGGAAGATCCCAAATTCGACCAAGTCGTGTTCGCTCCGCCTTCATCCGCTTCCGCGCTGGTCGCCTACCACGGAGGTGGTGCTGGCGAAGGGAGAGGAGAGCTCGCTATGGTGAAATTCGGAGAGAGGAAAAGGAAGAGAGGGCGGAAGCCGAAGGTGAAGGTGAACTTGGAGGAATCCTACAGCGGGATGGAGATTGTGAACAAGAACGGAGTGGTGATCAATCTGATGGATCTAGCGAAGGCGGAGGATCCTTTTGCGGAGGAGCTGAGGAGGCGGACTGACGGACTGCAGGGAGAGGAGGAGCTGTTAGGGTTTCTGAGGGATTTAGAGGGACAGTGGGGAAGCAGGAGGAGGAAGAGGAGGATTGTGGACGCTGCCAATTTCGGTGACGCATTGCCGCTTGGTTGGAAGCTTATTCTCGGGTTGAAGAGAAAGGATGGTCGCGCATGGATCTATTGTCGCAGATACATAAGCCCTAGTGGACAGCAATTTATGTCTTGTAGAGAAGTTGCTTCCTATTTGCAGTCTCTTATTGGCCATAGTGATGCACCGTTGCAAATCGGTCATAGGAGTGAGAATTTGCCGCAGGAACAAAGAGCAATCACTGAACACTCTGCAGGTGTTGCCCATGAGGATCAACGTGAATGGCAGATTGTTGTAGCTAACTCAGATGTACCTAGTTTTTCTGTTTCTAATGAACGTGGGATGGAATTGGCCTTGTTGGGTTTGGAAAATCTTGCAGACGTGGAAATACATGACCTATTTGAATGTCACAAATGCAATGTGACCTTTGACGAGAAGGATTCATACTTGCAGCACTTATTGTCATTTCACCAGAGAACAACAAGACGATATCGGCTTGGATCTTCTCTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAGTTCTGTCACAAGGTGTTTTCAGAAAGGCGTCGCTACAGTTCTCATGTGGGGATCCATGTTAGGAGTAATGTGAGGCAGGCTGAAGATTCGTCAGGTCTGGAAAATGTTCAACGGACAGACAAGTCTCCTGTGAGGGAGGACATGCTGCTTTCAAGAATCTCCAGGATGGATGCCCTTATTGAAATTGCTCAGAGCTCTATCATGGAGGATTGTGACATGGAGCCTGCTTCGAAAGTTGCTGCTTGTAGCTTGGATCAAGATATAAACTTTGAGTCAGAACAGCAAATGGAAGATAGCTTAAATGGAACAAATGTTGTTCAAGTTTTAAATCAGCAGGATAGTCCAGAGTTACACATGGATGTGGAAGAAGAGGAAACTGATGATGATAGCCAAGTTATTGATGCAAAGATGGTTACTTGTCTAGATCACACGGGTTTGTTATGTGTAAATGAGAAAAATGGTAATCCATCTGTTGAAGTGTTTGATAAGTCTGGGATTGATATGGGAGGAGCTTCTCAAGACCCTTTGCTTATTTTATCTTGCAAGGACAAAATATCAGATTCTGGGGAGAATGAAAATTTTTGTTGCTCTAATATCAAAGAAAAGTTTAAGTTTAATGAAGATAACAATAATAAGAATGAATTGGAAATTGGTTCAGATGGTTGCAAGGATGTTCCTGTTAGGACCAATGTTCAAGAGATGCTAATGCCAGCTTCTGAAGAAAATGTGATCGACTCTAGGGTTTCTAAATCTCCTATATCCCAAATGCAATCTTTGTATTGCTCTCCTGCTTTCAGCTCTGATAAGGTAGGAAAACAATCTTGTACTGAAGATCATGAGTATAAAAATGTGGAGCGGTTCCAGGAATTGGATGAAATCAGTACTACTGAGCATGATGCTACAAGTATTCAAGATTCCTTTTCACTGCCTGATGTGCAAACTGATATGGTAAACAAAACAGTGATGGAAACAACATATCCCTCCTCAGTTCAGGTTGAATCACAAGAAGTTATGCAGCTTACAACTGTGTGTGTTTGGTGTGGAATAGAGTTCAACCATGATGCCCTTAATTCTGAAATACAACCTGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCGAAAATCTCTGGTCAAATTAATGTGTTGGACAGTTGA 2466 0.4615 MATATAATSQLPAPPPQQQFLNLESLARIDTTTLSQSELHALSLSSLSAFDLHSTRRHLVTPKIDPSLFNESAGSRRQTYSRPRRPESSPTGRRRRVAGLLPAAKLPSLPSDDLGNAENRVIIDYLKQFIREDPKFDQVVFAPPSSASALVAYHGGGAGEGRGELAMVKFGERKRKRGRKPKVKVNLEESYSGMEIVNKNGVVINLMDLAKAEDPFAEELRRRTDGLQGEEELLGFLRDLEGQWGSRRRKRRIVDAANFGDALPLGWKLILGLKRKDGRAWIYCRRYISPSGQQFMSCREVASYLQSLIGHSDAPLQIGHRSENLPQEQRAITEHSAGVAHEDQREWQIVVANSDVPSFSVSNERGMELALLGLENLADVEIHDLFECHKCNVTFDEKDSYLQHLLSFHQRTTRRYRLGSSLGDGVIIKDGKFECQFCHKVFSERRRYSSHVGIHVRSNVRQAEDSSGLENVQRTDKSPVREDMLLSRISRMDALIEIAQSSIMEDCDMEPASKVAACSLDQDINFESEQQMEDSLNGTNVVQVLNQQDSPELHMDVEEEETDDDSQVIDAKMVTCLDHTGLLCVNEKNGNPSVEVFDKSGIDMGGASQDPLLILSCKDKISDSGENENFCCSNIKEKFKFNEDNNNKNELEIGSDGCKDVPVRTNVQEMLMPASEENVIDSRVSKSPISQMQSLYCSPAFSSDKVGKQSCTEDHEYKNVERFQELDEISTTEHDATSIQDSFSLPDVQTDMVNKTVMETTYPSSVQVESQEVMQLTTVCVWCGIEFNHDALNSEIQPDSVGFMCPACKAKISGQINVLDS* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0798 821 ProSiteProfiles Zinc finger C2H2 type domain profile. 433 460 IPR013087 -
Ahy20g0798 821 ProSitePatterns Zinc finger C2H2 type domain signature. 388 409 IPR013087 -
Ahy20g0798 821 ProSitePatterns Zinc finger C2H2 type domain signature. 435 455 IPR013087 -
Ahy20g0798 821 SUPERFAMILY DNA-binding domain 261 313 IPR016177 GO:0003677
Ahy20g0798 821 SMART c2h2final6 386 409 IPR013087 -
Ahy20g0798 821 SMART c2h2final6 433 455 IPR013087 -
Ahy20g0798 821 Gene3D - 241 346 - -
Ahy20g0798 821 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 19 818 - -
Ahy20g0798 821 MobiDBLite consensus disorder prediction 63 102 - -
Ahy20g0798 821 ProSiteProfiles Zinc finger C2H2 type domain profile. 386 414 IPR013087 -
Ahy20g0798 821 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 253 325 IPR001739 GO:0003677
Ahy20g0798 821 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 19 818 IPR037472 -
Ahy20g0798 821 Gene3D Classic Zinc Finger 375 463 - -
Ahy20g0798 821 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0798 Ahy-Chr20 10162071 10166001 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy20g0798 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0798 - - adu:107468625 1523.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0798 20 10162071 10166001 Ahy20g0798 20 10162071 10166001 ECH
Ahy20g0798 20 10162071 10166001 Ahy10g0525 10 5204653 5208491 hybridization