Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0789 ATGGAGGTGCAGTTGCAGAGCGATCCATGGGAGTGGGAGAAGCCAATGGCCACTTATCTGCTCCGCTACCACTCCGACCAGCTCCGATCCATCGCTTCCTCTCCCGATCCCAATCTTCACTATCCTCTCTTCATTGACTTCGCAGAGTTGATGGAGGAACATCCTCACCTTGCGCGTCTCATATTCTCCCAACCCACCCCTTACTTGCAAGCCTTCGACAATGCTGCTCTCTTGTCTCATAGAATTGTGGTGAGAGATTTAGAGCAAGAGAAGAATGTTGTTGAGAAAAATTTCATTCATGTTCGAATTAACATCAGTGGTTCTCCCCTTGAATGCTCTGAGACGTTTCCGACCATAGGGCGTGTTCGAGTGCAGCATCGCGGAATTCTTCTCACTGTGAAAGGGACTGTAATCAGGTCTGGAGCAATCAAGATGCATGAAGGAGAGAGGAAGTATATGTGCAACCAATGCAAGAAGAGCTTCACAGTTTATCCTGAGGTTGAAGCTCGAAACTCCATATCATTACCTTCAATTTGCCCCATGCAGAAATTGAAGCCCTGTGGAGGCACAAAATTTCAGTATGTAGAAAATACTGTAGTATGCCATGATTATCAGGAGATAAAAATCCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCCATTCCTCGTTCAATTCTTGTCATCTTGCATGATGATCTGGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTCTCTTGACTGCAAAATGGTCTCCAGAGTTGAAAGATGTGCGCTGTGACCTTGATCCTGTATTAATAGCCAACAGTGTAAGGAGGACCAATCAATTGAAGTCAGAAATGGACATTTCTGATGACTTAGTTACAAAATTCAAGCAGTTCTGGGACCATTTCAAAGATGCACCCTTAAAAGGGAGGAATGCTATTCTTCGAGGAATTTGCCCACAAGTATTTGGCCTGTTTACTGTCAAGCTGGCCGTTGCATTAACACTTATAGGAGGTGTTCAACATGTTGACGCTTCTGGAACAAGGGTAAGAGGGGAATCCCACTTACTCTTGGTTGGTGATCCCGGCACTGGAAAGTCTCAGTTTCTGAAATTTGCAGCGAAATTGAGCAATAGATCTGTTATTACCACTGGGCTGGGAAGCACAAGTGCTGGATTGACGGTTACTGCAGTCAAGGATGGAGGTGAGTGGATGTTGGAAGCTGGAGCCCTTGTTTTAGCAGATGGAGGATTGTGCTGCATAGATGAATTCGATAGCATGAGGGAACATGACAGGGCAACAATACATGAAGCCATGGAGCAGCAAACAATAAGTGTAGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACGGTATTTGGTGCCACAAATCCTAAAGGGCAATATGACCCCGATCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTTTACTTAGCAGGTTTGATATTGTCCTTGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACCTGATAGAGCCAACAACGATGAAGATCTAGCAAAAGTCTGGCCACTTTCTACACTCAAGAGGTACTTACACTATGTGAAAGAAACTTTCAAGCCAGTACTTACAAGAGAGGCCGAAAGAGTCATATCTAGCTATTATCAACTTCAAAGGAAGTCTGCAACTCATAATGCAGCCAGGACCACCGTCCGGATGCTGGAAAGTTTAATACGCCTAGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAAGTGACCCGATTAGATGCCATCACAGCAATTTTATGCGTAGAGTCCTCAATGACTACCTCAGCTATAGTGGATTGCATTGGGAATGCCCTGCACTCCAATTTTACTGAAAACCCTGATCAGGAATATGCTAAGCAAGAAAGACTGATCCTGGAAAAGTTGGGATCAATAGATGACTTCTCTGATATGAACAGAATGGGAGACTGA 1998 0.4454 MEVQLQSDPWEWEKPMATYLLRYHSDQLRSIASSPDPNLHYPLFIDFAELMEEHPHLARLIFSQPTPYLQAFDNAALLSHRIVVRDLEQEKNVVEKNFIHVRINISGSPLECSETFPTIGRVRVQHRGILLTVKGTVIRSGAIKMHEGERKYMCNQCKKSFTVYPEVEARNSISLPSICPMQKLKPCGGTKFQYVENTVVCHDYQEIKIQESTQVLGVGAIPRSILVILHDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANSVRRTNQLKSEMDISDDLVTKFKQFWDHFKDAPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRANNDEDLAKVWPLSTLKRYLHYVKETFKPVLTREAERVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSAIVDCIGNALHSNFTENPDQEYAKQERLILEKLGSIDDFSDMNRMGD* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0789 665 Gene3D - 122 250 IPR012340 -
Ahy20g0789 665 ProSiteProfiles MCM family domain profile. 307 510 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy20g0789 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 624 IPR027417 -
Ahy20g0789 665 Pfam MCM AAA-lid domain 533 614 IPR041562 -
Ahy20g0789 665 PANTHER DNA HELICASE MCM9 34 653 - -
Ahy20g0789 665 SMART AAA_5 349 498 IPR003593 -
Ahy20g0789 665 Pfam MCM P-loop domain 309 512 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy20g0789 665 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 34 653 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ahy20g0789 665 Pfam MCM OB domain 122 250 IPR033762 -
Ahy20g0789 665 SUPERFAMILY Nucleic acid-binding proteins 40 257 IPR012340 -
Ahy20g0789 665 CDD MCM9 310 614 - -
Ahy20g0789 665 Gene3D - 146 202 - -
Ahy20g0789 665 SMART mcm 115 616 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ahy20g0789 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 406 420 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy20g0789 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 348 363 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy20g0789 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 484 492 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy20g0789 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 434 447 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy20g0789 665 Gene3D - 281 620 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0789 Ahy-Chr20 10053747 10060767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0789 16 639 Core DNA Replication Machinery Family AT2G14050 76.077 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0789 K10738 - gmx:100776255 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0789 20 10053747 10060767 Ahy10g0513 10 5090437 5097401 hybridization