Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0769 ATGAAAAGAGAATTATTGAACAGAAATATGACGAAACATAAGATAGAAATAAAGAAGATAGAGAACATAGCAGCAAGGCAGGTGGCTTTTTCAAAGAGGAGAAGAAGTCTGTTCAAGAAGGCCGGGGAGCTTTCAACTCTCTGTGATGCAGAGGTGGCGCTCCTTGTCTTTTCTGCTACTGGCAAACTCTTCCAACACTCTAGTTCAAGTGTGGAACAGGTAGTAGAAATGCACAAAAATATGCATTCAAGCATCGACAAATCATCATATCACCCTCCAATGGAATTGCAAATGCGCAATGAGGTGGCAGATAAGACTCATGAATTAAGACAGTTAAATGGAGAAGAGCTTCAAGAATTAAAATTTCAAGAACTAATGAAACTTGAAGAACGTCTACTCAAAGGTCTGACCCGCGTTTTAAAAGCTAAGGGAGTGGATCTAATGCAAGAGAATAAGAAATTGCTGCAGATTGCTGATGAAAAAGAACAAGCATGA 495 0.3919 MKRELLNRNMTKHKIEIKKIENIAARQVAFSKRRRSLFKKAGELSTLCDAEVALLVFSATGKLFQHSSSSVEQVVEMHKNMHSSIDKSSYHPPMELQMRNEVADKTHELRQLNGEELQELKFQELMKLEERLLKGLTRVLKAKGVDLMQENKKLLQIADEKEQA* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0769 164 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Ahy20g0769 164 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Ahy20g0769 164 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Ahy20g0769 164 SUPERFAMILY SRF-like 12 85 IPR036879 GO:0003677|GO:0046983
Ahy20g0769 164 Coils Coil 3 23 - -
Ahy20g0769 164 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Ahy20g0769 164 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 10 154 - -
Ahy20g0769 164 CDD MADS_MEF2_like 14 84 IPR033896 GO:0000977|GO:0045944
Ahy20g0769 164 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Ahy20g0769 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 65 IPR002100 GO:0003677|GO:0046983
Ahy20g0769 164 Gene3D - 22 90 IPR036879 GO:0003677|GO:0046983
Ahy20g0769 164 PANTHER SERUM RESPONSE FACTOR HOMOLOG 10 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0769 Ahy-Chr20 9844771 9868590 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0769 10 156 MADS-box Gene Family AT2G22540 50.588 6.86e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy20g0769 SRF-TF 5.60E-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0769 - - ahf:112784740 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0769 20 9844771 9868590 Ahy10g0495 10 4940712 4947580 hybridization