Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0768 ATGCATATCACCACATATCCTAACTTGGGTGTTTCTTTATTGATTTCCTTTTTCGAATCATCTTCCATCTTCAAGAAGATGGAAATAAAGAAGATAGAGAAGAATGCATCAAGGCAAGCAACCTTTAGTAAGAGGAAGAGAGGGATTTTCAAGAAGGCTAAGGAGCTTTCAACTCTTTGTGATGCTGACTTGGCTCTCATTGTCTTTTCTCCTTCCGGCAAGCTCTTCGATTTCGCTTCCTCAAGTGTGCAGGAAGTAATTGAAAGATATCATATGCAAACAAGCATTTACAGATCACAAGACCAACAGTCTCATGAGTTTCAACTTGAGAAGGACACCTACTACCTGAAGTGCAAGGAACTAACAGATAAGACTATTGGACTCAGGCACTTGAATGGAGAGGAGCTGCAAGGAATGAAAATTCATGAACTACAGAAACTAGAGAAAGTGTTAGGAAAGGGTTTGGCTCGTGTTTCAAAAGAAAAGGATGAAAGAAATCTAAAAGATATTATTGAGATGAAGAAAAGGGGACTTCAAATGGTGCAAGACAACCATAGACTGAAACAGATGAGAAGTCAAACAAACAGTCAAGGGCAATCATCAAAGTCAAACTCTGCTGAAGAGTCAGATAATCGTGATCATGGTGCTCCTAATCTCAACTTGGGGCTTCCGATGTTCAAATGA 684 0.3947 MHITTYPNLGVSLLISFFESSSIFKKMEIKKIEKNASRQATFSKRKRGIFKKAKELSTLCDADLALIVFSPSGKLFDFASSSVQEVIERYHMQTSIYRSQDQQSHEFQLEKDTYYLKCKELTDKTIGLRHLNGEELQGMKIHELQKLEKVLGKGLARVSKEKDERNLKDIIEMKKRGLQMVQDNHRLKQMRSQTNSQGQSSKSNSAEESDNRDHGAPNLNLGLPMFK* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0768 227 MobiDBLite consensus disorder prediction 188 227 - -
Ahy20g0768 227 SMART madsneu2 25 81 IPR002100 GO:0003677|GO:0046983
Ahy20g0768 227 SUPERFAMILY SRF-like 25 108 IPR036879 GO:0003677|GO:0046983
Ahy20g0768 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 209 - -
Ahy20g0768 227 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 25 209 - -
Ahy20g0768 227 Gene3D - 35 114 IPR036879 GO:0003677|GO:0046983
Ahy20g0768 227 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Ahy20g0768 227 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Ahy20g0768 227 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Ahy20g0768 227 Pfam K-box region 109 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy20g0768 227 ProSiteProfiles MADS-box domain profile. 26 82 IPR002100 GO:0003677|GO:0046983
Ahy20g0768 227 MobiDBLite consensus disorder prediction 188 205 - -
Ahy20g0768 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 78 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0768 Ahy-Chr20 9800347 9808288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0768 25 193 MADS-box Gene Family AT2G22540 49.412 1.23e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy20g0768 K-box 1.50E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0768 - - ahf:112786765 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0768 20 9800347 9808288 Ahy10g0494 10 4915885 4922566 hybridization