Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0762 ATGGACACTGCGAATCAGCAGAGGCTGCAAGCAAGAACCTTTGATGATGATGATGATGATGAAGCCCAACAGCAGCAACAACAGCAACAAAAAACTGTGCTTGTTCCCATGCAGGTGAATGGTGCGTTGAACCCTTTTGATGGAGGTTCTCACGAGGTGGAAGAAGCTTTCGTGAGTTCTGGGTTGTCTTCTACTGCTACTTCTGTTCAGCCAAGAACCAGTGAGCTCACCATTGCATTTGAAGGCGAGGTTTATGTTTTCCCAGCGGTTACCCCAGAAAAGGCTGTATTGTTACTCTTGGGAGCCCAAGAGATTCCCAGGATTGCTGCCAGCTCTGATTCTTCGTTGCAGCAGAATTGTCAGCAGATTATGGGAATAAATGATGCTTCCCGAGGCTCAAAGGTTTCACGAAGAATTGAATCACTTGTAAGGTTCCGTGAAAAGCGAAAAGACCGATGCTTTGAGAAAAAAATCCGGTACACTTGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAGTTTGCGTCACTCAAGGAAGGCTACAAATCTCCTGCTGAAAATTTCGATTCAAGCAATGGTGGAGGTGATACTTATTCACAGTCTATTGAACGTAGATGTCAGCATTGTGGAACTAGTGAGAAGTCAACTCCAGCTATGCGTCGAGGACCTTCTGGTCCAAGATCTCTGTGCAACGCCTGTGGTCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCATCAAGAGTCACTTTTGAACAAAATGGACTGGATACATCAGCTGATATAAAACCTTCACCAACAGAACCAGAGAACTCTTCTCCTGACCAGAACGAGGATATCTGCCTAGAGGAAGCCAAACCTGTGCCAATAGATTCGAGACAGTCACCTGAGAGGAACAATGATCAGTATACACTTGATACTGCGGAAGCCGTTACCAACGATTCATCTATCCAAATGGAGAATAATGCTCTCAGCATACATCAAGAGGATAATAAACTTGAAGATTTTGCTGACGCTTCTGGGACAGAATTTGATATTCCTGCCTGTTTTGATGAGCAGGTTGACATTGACATTGATGATTCCAACATGAGGACTTACTGGCTATGA 1125 0.448 MDTANQQRLQARTFDDDDDDEAQQQQQQQQKTVLVPMQVNGALNPFDGGSHEVEEAFVSSGLSSTATSVQPRTSELTIAFEGEVYVFPAVTPEKAVLLLLGAQEIPRIAASSDSSLQQNCQQIMGINDASRGSKVSRRIESLVRFREKRKDRCFEKKIRYTCRKEVAQRMHRKNGQFASLKEGYKSPAENFDSSNGGGDTYSQSIERRCQHCGTSEKSTPAMRRGPSGPRSLCNACGLMWANKGTLRDLSKASRVTFEQNGLDTSADIKPSPTEPENSSPDQNEDICLEEAKPVPIDSRQSPERNNDQYTLDTAEAVTNDSSIQMENNALSIHQEDNKLEDFADASGTEFDIPACFDEQVDIDIDDSNMRTYWL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0762 374 Pfam GATA zinc finger 209 245 IPR000679 GO:0006355|GO:0043565
Ahy20g0762 374 ProSitePatterns GATA-type zinc finger domain. 209 236 IPR000679 GO:0006355|GO:0043565
Ahy20g0762 374 Pfam tify domain 71 99 IPR010399 -
Ahy20g0762 374 ProSiteProfiles GATA-type zinc finger domain profile. 203 259 IPR000679 GO:0006355|GO:0043565
Ahy20g0762 374 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Ahy20g0762 374 Pfam CCT motif 138 179 IPR010402 GO:0005515
Ahy20g0762 374 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 205 257 - -
Ahy20g0762 374 MobiDBLite consensus disorder prediction 260 284 - -
Ahy20g0762 374 ProSiteProfiles Tify domain profile. 69 104 IPR010399 -
Ahy20g0762 374 Gene3D - 201 260 IPR013088 GO:0006355|GO:0008270
Ahy20g0762 374 SMART GATA_3 203 256 IPR000679 GO:0006355|GO:0043565
Ahy20g0762 374 MobiDBLite consensus disorder prediction 1 31 - -
Ahy20g0762 374 PANTHER GATA TRANSCRIPTION FACTOR 28 1 363 IPR045280 GO:0006355
Ahy20g0762 374 CDD ZnF_GATA 208 251 IPR000679 GO:0006355|GO:0043565
Ahy20g0762 374 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0762 Ahy-Chr20 9721342 9731430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0762 75 267 Tify Gene Family AT1G51600 51.741 1.39e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy20g0762 CCT 5.40E-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0762 - - adu:107468732 708.753