Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0739 ATGGAACGGCGTCGAAATCCCACTAGCTACCCTCAAAACAATGCTTTCTCTTCTTATCCCTTCTCCGATAATGCATACAGCACTTCTTCTGGCCCCGCGCCACGTGGCAAGGGTCGTGCCGGTTACTCAACCGCCCCTTCCGGTGCTCGGGAACGTGGCCGCCGCTCTTCCTATCAACAACACGAACCTTCCTCCAACTGGAATAACCGCTTTCCCATCCACATTTCCCAAGACTTCAACCACCTTGACCTGAACGCTGAAGACGACACCACCTCCGGCGCCGGCGGGGGAATCAACTTCGAGGCGTACGAATCTGTACCGGTGGAGGTTAGCGGCGACGAAGTTCCCCTGCCGGTGGAATCGTTCGTGGAAACCGATTTCCACCAAGTGCTGAAGACGAACATCGAGCGGTGCAAGTACGTGAAGCCTACGCCGATTCAGCGCCACGCCATTCCCATTGCTTGCGCCGGCCGTGACTTGATGGCCTGCGCGCAGACTGGGTCCGGTAAAACGGCGGCGTTTTGCTTCCCGATCATTTCTGTTATTCTTAAGAATCGTCGTCCGGGGTTTACTTCTGTGGTTCGTGATCGTGGCGGCACTGTTTCATATCCAACGTCACTTATTCTTTCTCCTACTAGAGAATTATCTTGCCAAATACATGATGAAGCGAAGAAGTTTGCTCATCAAACTGGAGTGAAGGTTGTTGTTGCTTATGGTGGAGCTGCAATAACTCAGCAGCTGCGGAATTTAGAGAAGGGTGTTGATATACTTGTTGCTACTCCTGGGAGGTTGGTGGATATCATTGAAAGAGGGAGGGTTTCTTTGACAAGGATAAAGCTTCTTGCTTTGGATGAGGCTGATCGAATGTTGGACATGGGGTTTGAGCAGCAGATACGCAAGATTGTTGAGCAGATGGACATGCCTCCACCTGGTGTTAGGCAAACTATGCTTTTCAGCGCTACATTCCCTGATGATATTCAGAAGCTTGCATCTGACTTTCTATCAAACTACATATTCCTATCTGTTGGAAGGGTTGGTTCTAGCACTGAATTGATTGTGCAGAAAGTTGAATATGTTGAGGATAATGAAAAGATTAACCATCTAATGGATCTACTCCATGGTCAAAATGCACGTGGCGCCAACGGGAAGCCTGCTTTGACTCTTGTATTTGTTGAAACAAAGAGGGGAGCGGATAATTTAGAATCTACCTTGACGAGAAAAGGGTTTCGTGCTATTGCAATACATGGTGACAAAGTTCAAATGGAAAGGGAACGAGCTTTAAGATCCTTCAAAAAAGGTGCGACTCCTATCATGGTGGCGACAGATGTTGCTTCCAGAGGTTTGGATATCCCGCATGTGGCCCATGTCATCAATTATGATTTGCCAAGAAACATTGATGACTATGTTCACAGAATTGGCAGAACTGGCCGTGCTGGCAAATCTGGTTTTGCCACTGCCTTCTTCAGCTACAAGAACAATCATCTTGCAAAGCCTCTTGTTGACCTTTTGCAGGAAGCAAAGCAAGAAATTCCTTCTTGGCTGAGCCAATATGCTGGTGAGTCTTCATCATATGATGGCACTGGTGGTAGCCATCCATCTCAGCAGTATGGTGGTCGTGACTTCCGAAATGTTACTGAACCTGAAGTGGAGAATTATGACAACCACTCCACTACTTTTGGCGATTCATATAATGCTGATTATACATTTGACATAAAAGACTCCAATGAATATGCTGATTCATCATCTTATGAGATGGCAAATTCAGTTCCTCCTGCTACCAGTTGTCATTATACTTATGCCAATACTGACTTGTATGGAGGTGGCAACGTTGAAGATGGTCCTGGAGGTTATGCATCGATTGTTGCAACTGGATGGGACTAG 1881 0.471 MERRRNPTSYPQNNAFSSYPFSDNAYSTSSGPAPRGKGRAGYSTAPSGARERGRRSSYQQHEPSSNWNNRFPIHISQDFNHLDLNAEDDTTSGAGGGINFEAYESVPVEVSGDEVPLPVESFVETDFHQVLKTNIERCKYVKPTPIQRHAIPIACAGRDLMACAQTGSGKTAAFCFPIISVILKNRRPGFTSVVRDRGGTVSYPTSLILSPTRELSCQIHDEAKKFAHQTGVKVVVAYGGAAITQQLRNLEKGVDILVATPGRLVDIIERGRVSLTRIKLLALDEADRMLDMGFEQQIRKIVEQMDMPPPGVRQTMLFSATFPDDIQKLASDFLSNYIFLSVGRVGSSTELIVQKVEYVEDNEKINHLMDLLHGQNARGANGKPALTLVFVETKRGADNLESTLTRKGFRAIAIHGDKVQMERERALRSFKKGATPIMVATDVASRGLDIPHVAHVINYDLPRNIDDYVHRIGRTGRAGKSGFATAFFSYKNNHLAKPLVDLLQEAKQEIPSWLSQYAGESSSYDGTGGSHPSQQYGGRDFRNVTEPEVENYDNHSTTFGDSYNADYTFDIKDSNEYADSSSYEMANSVPPATSCHYTYANTDLYGGGNVEDGPGGYASIVATGWD* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0739 626 Gene3D - 79 341 IPR027417 -
Ahy20g0739 626 Pfam DEAD/DEAH box helicase 144 329 IPR011545 GO:0003676|GO:0005524
Ahy20g0739 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 494 IPR027417 -
Ahy20g0739 626 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 518 IPR001650 -
Ahy20g0739 626 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 50 554 - -
Ahy20g0739 626 CDD SF2_C_DEAD 352 488 - -
Ahy20g0739 626 Gene3D - 342 522 IPR027417 -
Ahy20g0739 626 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 50 554 - -
Ahy20g0739 626 CDD DEADc_DDX3_DDX4 121 346 IPR044763 GO:0003724|GO:0005524
Ahy20g0739 626 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 148 IPR014014 GO:0003724
Ahy20g0739 626 MobiDBLite consensus disorder prediction 7 31 - -
Ahy20g0739 626 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 340 IPR014001 -
Ahy20g0739 626 Pfam Helicase conserved C-terminal domain 363 479 IPR001650 -
Ahy20g0739 626 MobiDBLite consensus disorder prediction 1 71 - -
Ahy20g0739 626 SMART ultradead3 139 355 IPR014001 -
Ahy20g0739 626 SMART helicmild6 398 479 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0739 Ahy-Chr20 9322013 9325102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0739 118 487 Eukaryotic Initiation Factors Gene Family AT3G19760 33.423 2.32e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0739 K11594 - gmx:100791226 724.546