Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0728 ATGAATTTCCCTGATAATATACAAACATTCACGATGTCACCGACGAGATTCGCATCAACGGATGCCATTGATGTGAGGCTTCGTCAAGTTCCAATGAACAATGAATCATTGGACCTGCATTCGCATTTGGACCAAACCCCTTTGGCCAAGAGGCCAAGAACTTCAATGGAGAACCTCAATGATTCGCCAAGGACGATGAACACGGCAAACCCTGCAGGGAACAAAGGAACGAGCCACATTTTCTACAAAACCAGAATCTGCGCAAAGTTCCGGCTCGGAACCTGTAGGAACGGCGAGAACTGCAACTTTGCGCACGGCGCCGACGATGTGAGGCAGCCACCACCTAACTGGCAAGAAATTGTTGGATTGAGAGGCAATGACGAAAGGTCTTCAGGGAATTGGGATGATGATCACAAGATCATCCATAAGATGAAGCTATGCAAGAAGTTTTACAATGGTGAGGAGTGTCCTTATGGTGAGAGGTGCAGTTTCCTTCATGAGGATCCTGGAAAGTTCCGGGAGGATTCGAATTCTGCGAGATATAGAGATAGGGAGAGCTCAGTAATAAGCATAGGGACTACTAATGGTTCACCGCCAAAGGGATATGGTGGTGGTGATGGTGGTGGCTCTAGGTGTAATAGTTCAGAAGGTTGTGGTAATAATAGGGCTGTGAACAATGGTAATGGTGGTGTGGCTGGGTTGAATGTTTCAAGGGGTTCTTCCAAGGGTACTTATTGGAAGACTAAGCTTTGTATCAAGTGGGAGACTACAGGGCACTGTCCTTTTGGTGGGGACTGTCACTTTGCCCATGGACAAGCAGAGTTGCAAGCTCCTGGTGGACGCGCTGAAGCAGAAGTTGTTGGAGCTATTTCAGCTTCAACAAAGTCTGCCGTTCCAAATTTACCAAATGTTGTATCATCAGTTCATGCCAATGAAGTGCACCCCAGCAACACGGCAAGTGTACCTCCGGCGAATGAAGACGGGCAGGGTAACAAATCTCTGCTCAAGTGGAAAGGATTTAAGAAGATCAATCGGATTTACGGTGATTGGCTCGATGATTTTCCACTTGTGCACAACTTGCCAAGTAGAGTGGAGACCTGA 1101 0.4723 MNFPDNIQTFTMSPTRFASTDAIDVRLRQVPMNNESLDLHSHLDQTPLAKRPRTSMENLNDSPRTMNTANPAGNKGTSHIFYKTRICAKFRLGTCRNGENCNFAHGADDVRQPPPNWQEIVGLRGNDERSSGNWDDDHKIIHKMKLCKKFYNGEECPYGERCSFLHEDPGKFREDSNSARYRDRESSVISIGTTNGSPPKGYGGGDGGGSRCNSSEGCGNNRAVNNGNGGVAGLNVSRGSSKGTYWKTKLCIKWETTGHCPFGGDCHFAHGQAELQAPGGRAEAEVVGAISASTKSAVPNLPNVVSSVHANEVHPSNTASVPPANEDGQGNKSLLKWKGFKKINRIYGDWLDDFPLVHNLPSRVET* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0728 366 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Ahy20g0728 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 246 272 IPR000571 GO:0046872
Ahy20g0728 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 166 IPR000571 GO:0046872
Ahy20g0728 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 106 IPR000571 GO:0046872
Ahy20g0728 366 Gene3D - 239 277 - -
Ahy20g0728 366 Gene3D - 73 112 - -
Ahy20g0728 366 Gene3D - 139 173 - -
Ahy20g0728 366 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 355 IPR045877 GO:0003729
Ahy20g0728 366 MobiDBLite consensus disorder prediction 183 197 - -
Ahy20g0728 366 MobiDBLite consensus disorder prediction 173 215 - -
Ahy20g0728 366 SUPERFAMILY CCCH zinc finger 141 168 IPR036855 GO:0046872
Ahy20g0728 366 MobiDBLite consensus disorder prediction 51 75 - -
Ahy20g0728 366 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Ahy20g0728 366 SUPERFAMILY CCCH zinc finger 244 276 IPR036855 GO:0046872
Ahy20g0728 366 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Ahy20g0728 366 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Ahy20g0728 366 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Ahy20g0728 366 MobiDBLite consensus disorder prediction 45 75 - -
Ahy20g0728 366 SUPERFAMILY CCCH zinc finger 79 112 IPR036855 GO:0046872
Ahy20g0728 366 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 355 - -
Ahy20g0728 366 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0728 Ahy-Chr20 9026847 9029374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0728 247 276 C3H Transcription Factor Family AT1G68200 60.000 2.07e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy20g0728 zf-CCCH 2.40E-10 CL0537