Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0687 ATGACGCTGGACGATGATAGTTCCATCTACGTTGGGGGTCTTCCCTACGACGCTTCCGAACAAACTATCCGCTCTGTCTTTCATTTATATGGCGCCATCCTTGATGTTAAGATTATCAACGAGCATCGCACTAGGGGCAAGTGCTATTGCTTTGTTACTTTCACGAATACTAGGTCAGCAATTAATGCCATCAACGACATGAATGGCAGGACCATTGATGGGCGTGTCATTAAAGTGAATGGGGTGAGGACTCGTGGTGGGAGATCAAATTTCGGTAGTAGAGAGCGATATCATCATGCTGCTGAGAGGGATGTCGACTGGGATAGAGATAGAGACCGAGGCTATGATCATGATAGGGATGGATACAGGAATAGGAACGGCCATTGGCCTCGAGAACGTGATAGGTCTCGAGACCCTGACCAGGATAGGGATAGAAGAGTTGAGCATATGCATGATCGTCATCATGATGATCATGCCGGAGAACCTTCCTTAGATAAAGGTTGGAGTCGAGGGGATGACCGTGCAGGAAACGGACAAGATAATGGCAGGGCATATAGTGAAGATATGGATGGAGACCACAGCTTTGATTTGAATACAGACAGGAGGATGGATACCAGTGATCGTGATAAGATTTTTGACGAAGATAAAAATGAACAGTCAAGGAGAAACAACGATTTGAATGTTAATAACCATCATCACATGCATCTTTCATCAGATTCAAATGGCAATCATAGTGATCAGGTAGAAGATGAATTAAAGCAATCAACTGAACAACTCGATCAACTGAAAAAGGAGGTGTCGCAAATGGGAGAGAGATTGGAAGAGAAAAGACTTCTTGTTATGGACTTACAGAAGAAGTCTAGGAAATTGGAGGAGGCACTGACTAACGCAAAGAAACACACTTCATATCGTCAAAAGCAGTTGACCAATCTGCATAAATGTTTTGTACAAGTAAAAGAGTGCACCGAAAGGCTTAAAACCAGCGAAAAAGAACTTAAGGCTATAGTGGATGCATCATCAATGTTAGAGAATGATGGTGATGGTGTTGGCTTTCAGGATGGACAACTCGCAAATGGCAGATACTAA 1086 0.4328 MTLDDDSSIYVGGLPYDASEQTIRSVFHLYGAILDVKIINEHRTRGKCYCFVTFTNTRSAINAINDMNGRTIDGRVIKVNGVRTRGGRSNFGSRERYHHAAERDVDWDRDRDRGYDHDRDGYRNRNGHWPRERDRSRDPDQDRDRRVEHMHDRHHDDHAGEPSLDKGWSRGDDRAGNGQDNGRAYSEDMDGDHSFDLNTDRRMDTSDRDKIFDEDKNEQSRRNNDLNVNNHHHMHLSSDSNGNHSDQVEDELKQSTEQLDQLKKEVSQMGERLEEKRLLVMDLQKKSRKLEEALTNAKKHTSYRQKQLTNLHKCFVQVKECTERLKTSEKELKAIVDASSMLENDGDGVGFQDGQLANGRY* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0687 361 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 360 - -
Ahy20g0687 361 SUPERFAMILY RNA-binding domain, RBD 4 94 IPR035979 GO:0003676
Ahy20g0687 361 MobiDBLite consensus disorder prediction 109 177 - -
Ahy20g0687 361 CDD RRM_SF 9 80 - -
Ahy20g0687 361 Coils Coil 318 338 - -
Ahy20g0687 361 Gene3D - 2 98 IPR012677 -
Ahy20g0687 361 Coils Coil 245 300 - -
Ahy20g0687 361 SMART rrm1_1 8 80 IPR000504 GO:0003723
Ahy20g0687 361 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 360 - -
Ahy20g0687 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Ahy20g0687 361 MobiDBLite consensus disorder prediction 185 229 - -
Ahy20g0687 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Ahy20g0687 361 MobiDBLite consensus disorder prediction 109 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0687 Ahy-Chr20 8002044 8005333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0687 7 79 Eukaryotic Initiation Factors Gene Family AT3G16380 32.877 5.08e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0687 - - gmx:100816804 443.351