Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0676 ATGTCTCACGCCAACTGGGAAGCTGATAAAATGCTGGATGTGTATATCTATGATTATCTGATGAAGAGGCAGTTGCATGCTTCTGCCAGGGCATTCCAGGCCGAAGGAAATGTGTCGACCGACCCTGTTGATGCGCCTAGTGGTTTTCTCTTCGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCAAGGACCGATCAGAAACACTCAGAAGCAGCGGCAATTTATAGCAAGACCCAACAAAGTAAGGCTCGAGAACTGCAAAAACATCAAGAGCAAGAGCTTCAGAATCCAAATCAGAGACAACAAATGCAAATGCAACTCTATATGCAGAGATATGCTCAGCAGCAGGAACAGGAGCAGCAGTTACAGGAGCAGCGGCAGCAGCAGCTTAGGGCTCAGCTTGTTGGTGGCAGCGGTATCCGTCCTATTAACAATGATCCTTCAATCAGGCAGAAACGTGCAACTTCTAATGCTATGGCAACAAGAGTGTATGAGGACAGGTTGAAGTTGCCACTCCAGAGAGATGATTTAGATGATGTTGCCATCAAGCAAAAGGGAAGTGGTAATGTTGGTCAGCTTCTGGACCCAAATCATGCCTCATTGTTGAAAGGAGTAGCAGTGACAACTGGCGGCCAGGCTACAGGTCAAACGTCTCTCGGTGCACCTAACATTTTACAAGGCAGTCTTCAACAAGTTCAAAATCAGAACCAGCATCTTCCAGGATCTCTGGACATGAAAAGTGATATGAATCCAATGGTTAGACCTCAAGCTGTTATATCAGATGGATCCTTTGTTGGTGGACATGGTTCAAATCAAGGTTGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAGGACTGGATCAGCTTCGCTCAGAATTTCTTCAGCAGAATAATTTGATGCAGCCTCCACATTCTCTCAATCATCTTTCAGTGCAGCAGCAACTTATACTTCAGGCACAACAACATGCTGTAGGTTCCCCCTCCGCCACTGATTTTGAGAACAGAAGACTCAGGATGCTTCTTAATAATCCAAATATGGGTCTTGTGAAAGATGGACGATCGAATTCAGCATATGACTCAATTCCTAATGTGTTGGCTGCACAAGTTTGTTCTCCGATGTTGACTCATCCGGATACAGATATGTTCCTTAAGCAACAAATGCAAAACAGCAGTCACCAGCTTCAACAACATCTGCAGCATCCTCCTTCAAACCAGCAGTTGCAGAATCTCCAGCGGCAAGGAAAAATTGGTTCCGGGAGCAATACACAAGATGGGTGCATGTCCACCTTACAAGGAAATGATCAGGCTTCCAAAACTCAAGTTGGCCGAAAGCGAAAGCAAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCAACCACCACAGGACCATCTACCAGTTCGCCTTCAACACCATCTACACAAACGCTCGGAGATGTGCCAAATCTGCAACAGAATGTTCCATCTTCTAAGTCAGTGCTTATGTTTGGTACTGATAGCTTGGGATCACTTACATCGGCCCAAAATCAACTGGCTGATATGGACTGCCTTATTGGTGACGGAACTTTCAGTGACAATGTTGAGTCGCTCTTTTCTGCTGATGATGCAGACCCTAGAGATAAGATTGGCAAAGAATTCTCATTCAAAGAGACCAAATGTGTTATGGCAAGCACACATAAAGTTGAGTGTTGCCACTTCTCATCAGATGGAAAACTGTTTGCTACTGGTGGCCATGATAAAAAGGTATCTTTGTGGTGCACAGAATCGTTTAACCTGAAGTCGACACTAGAAGAACATACTCAGTTGATAACCGATGTTCGATTTAGTTCTTCAAGGACATCGCGCCTTGCTACATCCTCAGCTGACAAAACTGTTCGGATTTGGGATACTGAAAATCCTGGTTATTCTCTTCGAACATTCACAGGACATGGTTCAACTGTGATGTCACTAGACTTTCACCCTAGTAAAGACGACCTTATTTTCTCTTGTGACAATAATGAGATAAGATACTGGAGTATTAAAAACGATGGTTGTGCTGGGGTTTACAAGGGTGGCGTAACTCAGATGAGATTTCAACCTCGTTTGGGAAGGCTTCTTGCAGCTGCGGTAGATAATCTCATTTCCATTATTGATGTAGAAACCCTCGGTTGCACACTCAAATTACAGGGCCATAATAACCTTGTCCGTTCGGTTTGCTGGAACAATTCGGGAAAATATCTAGCATCTCTTAGTGATGATCTTGTTAGGGTATGGACAGTTGGATCAAGTAGCAAAGGGGAGTGCATTCATGAACTCAATGCATCCAGGAACAAATTCAACACCTGTGCCTTCCACCCCTTCTATCCTTTTCTGATCATTGGCTGCAATGAAGCAATTGAGCTGTGGGACTTTGTTCAGAACAAGACATTGACACTGGCTGCTCATGAAAAGCTTGTATCATCCTTGGCAGTATCTAGTGTTAATGGTTTGGTTGCTTCAACTAGTCATGACAAGCATTTCAAGATCTGGAACTGA 2523 0.4423 MSHANWEADKMLDVYIYDYLMKRQLHASARAFQAEGNVSTDPVDAPSGFLFEWWSVFWDIYIARTDQKHSEAAAIYSKTQQSKARELQKHQEQELQNPNQRQQMQMQLYMQRYAQQQEQEQQLQEQRQQQLRAQLVGGSGIRPINNDPSIRQKRATSNAMATRVYEDRLKLPLQRDDLDDVAIKQKGSGNVGQLLDPNHASLLKGVAVTTGGQATGQTSLGAPNILQGSLQQVQNQNQHLPGSLDMKSDMNPMVRPQAVISDGSFVGGHGSNQGCSNLTLKGWPLAGLDQLRSEFLQQNNLMQPPHSLNHLSVQQQLILQAQQHAVGSPSATDFENRRLRMLLNNPNMGLVKDGRSNSAYDSIPNVLAAQVCSPMLTHPDTDMFLKQQMQNSSHQLQQHLQHPPSNQQLQNLQRQGKIGSGSNTQDGCMSTLQGNDQASKTQVGRKRKQASSSGPANSSGTATTTGPSTSSPSTPSTQTLGDVPNLQQNVPSSKSVLMFGTDSLGSLTSAQNQLADMDCLIGDGTFSDNVESLFSADDADPRDKIGKEFSFKETKCVMASTHKVECCHFSSDGKLFATGGHDKKVSLWCTESFNLKSTLEEHTQLITDVRFSSSRTSRLATSSADKTVRIWDTENPGYSLRTFTGHGSTVMSLDFHPSKDDLIFSCDNNEIRYWSIKNDGCAGVYKGGVTQMRFQPRLGRLLAAAVDNLISIIDVETLGCTLKLQGHNNLVRSVCWNNSGKYLASLSDDLVRVWTVGSSSKGECIHELNASRNKFNTCAFHPFYPFLIIGCNEAIELWDFVQNKTLTLAAHEKLVSSLAVSSVNGLVASTSHDKHFKIWN* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0676 840 Pfam LisH 10 36 IPR006594 GO:0005515
Ahy20g0676 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 635 IPR001680 GO:0005515
Ahy20g0676 840 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 840 IPR044716 GO:0003714
Ahy20g0676 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 643 678 IPR001680 GO:0005515
Ahy20g0676 840 SUPERFAMILY WD40 repeat-like 562 840 IPR036322 GO:0005515
Ahy20g0676 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 557 588 IPR001680 GO:0005515
Ahy20g0676 840 Coils Coil 99 134 - -
Ahy20g0676 840 CDD WD40 553 840 - -
Ahy20g0676 840 ProSitePatterns Trp-Asp (WD) repeats signature. 619 633 IPR019775 -
Ahy20g0676 840 SMART Lish 8 40 IPR006594 GO:0005515
Ahy20g0676 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 808 840 IPR001680 GO:0005515
Ahy20g0676 840 MobiDBLite consensus disorder prediction 410 489 - -
Ahy20g0676 840 PANTHER LISH-SSDP-WD40 3 840 - -
Ahy20g0676 840 MobiDBLite consensus disorder prediction 81 101 - -
Ahy20g0676 840 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 643 678 - -
Ahy20g0676 840 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 808 840 - -
Ahy20g0676 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 724 756 IPR001680 GO:0005515
Ahy20g0676 840 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Ahy20g0676 840 Pfam WD domain, G-beta repeat 595 632 IPR001680 GO:0005515
Ahy20g0676 840 Pfam WD domain, G-beta repeat 805 840 IPR001680 GO:0005515
Ahy20g0676 840 Pfam WD domain, G-beta repeat 720 754 IPR001680 GO:0005515
Ahy20g0676 840 Pfam WD domain, G-beta repeat 560 588 IPR001680 GO:0005515
Ahy20g0676 840 Pfam WD domain, G-beta repeat 639 675 IPR001680 GO:0005515
Ahy20g0676 840 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 599 635 - -
Ahy20g0676 840 Gene3D - 525 684 IPR015943 GO:0005515
Ahy20g0676 840 Gene3D - 685 840 IPR015943 GO:0005515
Ahy20g0676 840 SMART WD40_4 717 755 IPR001680 GO:0005515
Ahy20g0676 840 SMART WD40_4 801 840 IPR001680 GO:0005515
Ahy20g0676 840 SMART WD40_4 636 675 IPR001680 GO:0005515
Ahy20g0676 840 SMART WD40_4 550 589 IPR001680 GO:0005515
Ahy20g0676 840 SMART WD40_4 592 632 IPR001680 GO:0005515
Ahy20g0676 840 SMART WD40_4 678 714 IPR001680 GO:0005515
Ahy20g0676 840 SMART WD40_4 761 799 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0676 Ahy-Chr20 7644789 7651371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0676 637 840 Miscellaneous Gene Families AT5G08390 25.592 8.49e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ahy20g0676 WD40 0.014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0676 - - aip:107624271 1302.35