Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0671 ATGGGACGAGGAAAGATTGCGATTCGAAGGATCGACAATTCAACGAGTCGGCAAGTAACGTTTTCGAAGAGAAGGAATGGATTGCTGAAGAAAGCTAAAGAATTATCCATTCTCTGTGATGCTGAAGTTGGATTGATTGTGTTTTCCAGCACTAGCAAGCTTTATGAATATGCAAGCACCAGCATGAAATCAATTATTGAACGCTACAACAAGCTTAAGGAAGAACATAATCAGCTGATGAATCCAGCTTCCGAAGTCAAGTTTTGGCAGAGAGAAGCTGCAAGCTTGAGGCAACAACTGCAGCACTTGCAAGAATGCCACAGGAAACTGATGGGCGAAGAGCTTTCTGGACTGGGTGTTCAAGAACTACAAAATCTTGAAAACCAACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTCACAGATGAGATTAAAGAACTACACCAAAAGGGAAATCTCATTCATCAAGAAAATGTAGAACTCTATAAAAAGATGGAATTCTTACAAAAAGAAAATGCAGAGCTAAAAAAGGTTTATGAAGCAAGGAGTACAAATGGAGAAAATGCAGCATCCAATCCTCCATACACTATCGGAAATGGATATGACTTACTTGCACCTATCAGTCTCCAACTAAGCCAGCCAGAGACTCAATACACTGAACCACCTGCCAAAGCAATGAAACTGGGGTATTTCCTCACACCAATAATAACACAGTTCTTTTCTATACATTTACTTTATAATTTCGTTAAAATTAGAAACCAAATTTCTGCATCAGACTGCAGCTGCAATAACAAAAACTGTTCAAGAATCGTGGATGATTACCATTTCTGA 846 0.3877 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTSKLYEYASTSMKSIIERYNKLKEEHNQLMNPASEVKFWQREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQIFTDEIKELHQKGNLIHQENVELYKKMEFLQKENAELKKVYEARSTNGENAASNPPYTIGNGYDLLAPISLQLSQPETQYTEPPAKAMKLGYFLTPIITQFFSIHLLYNFVKIRNQISASDCSCNNKNCSRIVDDYHF* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0671 281 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy20g0671 281 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy20g0671 281 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy20g0671 281 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy20g0671 281 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy20g0671 281 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy20g0671 281 Coils Coil 163 183 - -
Ahy20g0671 281 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ahy20g0671 281 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Ahy20g0671 281 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Ahy20g0671 281 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy20g0671 281 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy20g0671 281 Coils Coil 86 106 - -
Ahy20g0671 281 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 243 - -
Ahy20g0671 281 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy20g0671 281 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0671 Ahy-Chr20 7343894 7355000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0671 1 237 MADS-box Gene Family AT2G14210 63.025 1.87e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy20g0671 K-box 2.20E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0671 K09264 - gmx:100808145 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0671 20 7343894 7355000 Ahy20g0671 20 7343894 7355000 ECH
Ahy20g0671 20 7343894 7355000 Ahy10g0472 10 4689116 4699777 hybridization