Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0649 ATGGAGATTTCATCTGAATTGGGTATAATGGAGGATCCTAATAGCTTTCTCTGGCACTTAAGCTCTATTGATACTTGTGCTACTACCTTAGCTGTTTTTGGAGATAGCTTGCAAAAGAATAATCCATTATTCTGTAACTCAAACTTGATGAACTCCAAGATTTCCATGATGGAAACTACTACTTCACCTACTGCTACTATAATTGAAAGACCAGCAAAACAGCTTAGAAGTAACAACACTAGTAATTGGAGTAGTCACATTAACAAGACACCAGAGTCACACTTTGTTGGTTCTTGCTCAAATAATATTCTCTCCTTTGTTGACAACACAAATCATCATCATCATCAATTGGGGTTAGTAATGAAGCCTAAGGTTGAGATTATGAATAGTAGTAGTCCTAACAACATAGATACTCAAGGAACAACCTTGTTGGGGAATAATAATAATAATCATCATAATCATGAAAACTATCTATTCAAAGAATCATCATGCCATGAGGCTAAGAACTTTGGGCAACGTCCTAAGCTTTCTTCTCATCAACCTCATGATCACATCATTGCTGAGAGGAAGCGCAGAGAGAAGCTCAGCCAGCGCTTCATTGCTTTATCTGCCCTTGTTCCTGGCCTCAAAAAGATGGATAAAGCTTCTGTTCTGGGAGATGCTATAAAGTACTTGAAACAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAAAAAGAAGAAGACCGTGGAATCAGTGGTAATGGTGAAGAAATCTCAGTTATGTAATGATGATGAAGACTCTTGCTCTTCAGAGACTGAGCCGCTACCCGAAATTGAAGCAAGATTTTGCGAAAGAAATGTGCTAGTAAGAGTTCACTGCGAGAAGAAAAAGGGTGTTATAGAAAATACAATCATTGAAATTGAGAAACTCCATCTCAAAGTCATCAATAGCAGCGTCTTAACATTTGGGACTTTTGCCCTTGATATAACCATCATTGCTCAGATGGACATGGAATTTTCCATGACAGTGAAGGAACTTGTTAAGAATCTACGTTTAGCGTTTTCAACTTTCATGTGA 1065 0.3803 MEISSELGIMEDPNSFLWHLSSIDTCATTLAVFGDSLQKNNPLFCNSNLMNSKISMMETTTSPTATIIERPAKQLRSNNTSNWSSHINKTPESHFVGSCSNNILSFVDNTNHHHHQLGLVMKPKVEIMNSSSPNNIDTQGTTLLGNNNNNHHNHENYLFKESSCHEAKNFGQRPKLSSHQPHDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQMQEKVSALEEEQKKKKTVESVVMVKKSQLCNDDEDSCSSETEPLPEIEARFCERNVLVRVHCEKKKGVIENTIIEIEKLHLKVINSSVLTFGTFALDITIIAQMDMEFSMTVKELVKNLRLAFSTFM* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0649 354 CDD bHLH_AtNAI1_like 183 254 - -
Ahy20g0649 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Ahy20g0649 354 SMART finulus 185 234 IPR011598 GO:0046983
Ahy20g0649 354 PANTHER BHLH TRANSCRIPTION FACTOR 6 353 - -
Ahy20g0649 354 Pfam Helix-loop-helix DNA-binding domain 184 229 IPR011598 GO:0046983
Ahy20g0649 354 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 6 353 - -
Ahy20g0649 354 Gene3D - 178 252 IPR036638 GO:0046983
Ahy20g0649 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 241 IPR036638 GO:0046983
Ahy20g0649 354 Coils Coil 218 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0649 Ahy-Chr20 7061920 7065044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0649 182 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 58.889 6.37e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy20g0649 HLH 7.00E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0649 - - aip:107624263 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0649 20 7061920 7065044 Ahy20g0649 20 7061920 7065044 ECH
Ahy20g0649 20 7061920 7065044 Ahy10g0449 10 4398605 4401408 hybridization
Ahy3g2943 3 125864804 125868253 Ahy20g0649 20 7061920 7065044 PCT
Ahy20g0649 20 7061920 7065044 Ahy3g2943 3 125864804 125868253 PCT