Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0586 ATGGCCGAGGAGTTTCAAGCTACAATTTGTGGTGATAACTATTGGTGGAACTCAAATAGAAGTTTGTTCTCTTTGATGGGGGGATCAATGACGTGTTCTGTAGCAGCTGCTAATGATTCAGCAAACAATTATGGCTCTTTCTGGCAAGGTTCTGATTTCATGGATTTCAAGGGAGCAACAACAAAATCTTCTTTTAAAGAAGAAGATACAGACAAGTGTAGTAATAATGAATCATCAATATCAGCAGCAGTAGCAGGTGGAACCGTTGGGAGTATCTTCATCAATTCCACCTCACAAATGATGAGTTATGGCCTCTCATCTTCACCATCATCCCCTTGGAATAATCCTTCTCTATTTGGTTGTAATGAAAGGTCAGAAAACAATTTCCAATCTGTTGTGCTTCAAGAAGAAACGGGATTAGATCCTTCTAGTAATAACTCACAACAGATCCAACAACAGCAAGAATTTTCGAGTTCCATGGGTGGTGGATTTACAGTTGAATCATCATTATCTGCATCTCATGATTACCCCTTGATGCAAGCAGGACTATTTGGTTCGACTGACTCATCATCATCACTCTTCACAACTAACCAACCAACCCTTCCTGAACTGTCACCAATATGGTCTACGGTGTCTTCCTTTACGAAGCCTTCATCATTTATGGAGCCAAAGCAACTTAATGGATTGCAATTCTCAAACAATACTCCTTTCTGTAATGCTTCAACTGAAGAGACACTTTATAATATAAGATCTGATATCTTTTCTTCGTCTTCTTCTCAACCACAGCTATATCAAACATCACCAACAACTTTTGATAATAGCAAACCCAATAATGCTCTAACTAGTACTCCACTCAACAAGTTGAAGAGAGAAGAATCTCCAGAAAAAGCATCATCATCAGTCTGTAGCAAAAATGTTTCTGGGCGCGTCTTCAAAAAAGCAAGAATTGAAACGCCATCTCCTTTGCCTACTTTTAAGGTTCGAAAAGAAAAGTTAGGGGACCGAATTACTGCTCTTCAGCAATTGGTATCACCTTTTGGAAAGACGGACACTGCATCGGTTCTACATGAAGCCATTGAGTACATCAAATTTCTTCATGATCAAGTCAATGTTTTAACTGCTCCATATATGAAAAATGGGTCTTCCATTCAAGATCAACAGGGATGTGATTATGAAAAGGATTCAAAATGTTTAACGCAAGATTTGAGTAGTCGAGGGCTTTGTTTGGTACCAGTTGCAAGCACATTTCCGATGGCTACTGAGACCACCGCTGATTTTTGGACGCCTACATTTGGAGACTCACTCATCGGCAATGTGGCAGGTAGTCATCAATGA 1335 0.3963 MAEEFQATICGDNYWWNSNRSLFSLMGGSMTCSVAAANDSANNYGSFWQGSDFMDFKGATTKSSFKEEDTDKCSNNESSISAAVAGGTVGSIFINSTSQMMSYGLSSSPSSPWNNPSLFGCNERSENNFQSVVLQEETGLDPSSNNSQQIQQQQEFSSSMGGGFTVESSLSASHDYPLMQAGLFGSTDSSSSLFTTNQPTLPELSPIWSTVSSFTKPSSFMEPKQLNGLQFSNNTPFCNASTEETLYNIRSDIFSSSSSQPQLYQTSPTTFDNSKPNNALTSTPLNKLKREESPEKASSSVCSKNVSGRVFKKARIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLTAPYMKNGSSIQDQQGCDYEKDSKCLTQDLSSRGLCLVPVASTFPMATETTADFWTPTFGDSLIGNVAGSHQ* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0586 444 CDD bHLH_AtbHLH_like 322 372 IPR045239 -
Ahy20g0586 444 MobiDBLite consensus disorder prediction 258 287 - -
Ahy20g0586 444 Gene3D - 326 387 IPR036638 GO:0046983
Ahy20g0586 444 MobiDBLite consensus disorder prediction 258 299 - -
Ahy20g0586 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Ahy20g0586 444 MobiDBLite consensus disorder prediction 138 162 - -
Ahy20g0586 444 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 57 421 - -
Ahy20g0586 444 PANTHER TRANSCRIPTION FACTOR BHLH103 57 421 - -
Ahy20g0586 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 378 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0586 Ahy-Chr20 6248754 6251484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0586 1 432 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 36.830 4.65e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0586 - - adu:107468661 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0586 20 6248754 6251484 Ahy10g0391 10 3757090 3759662 hybridization
Ahy3g2968 3 126196051 126199059 Ahy20g0586 20 6248754 6251484 PCT
Ahy20g0586 20 6248754 6251484 Ahy3g2968 3 126196051 126199059 PCT