Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0584 ATGACGAATTCTAACGCTGTAGAGAATCACAGAAACAACGTCGGCGTCGCCACAAAACAAACGAAGAAGATCAACAGAGAGGAGAAAGGCAAGTCCTCATCGATTTCCTCGTTCGTGTGCGAAATCTGCATTGTGACTAAAACCGAAGCGGAATCTTTCACCATAAGTGGTTGCACACACTCGTATTGTACGGATTGCGTGGTGAAGTACGTTTGTTCTAAGCTCGACGACAACGTGATCAATATCCGGTGTCCGGTGCCCCGGTGCCGTGGTCTATTGGAAACCAATGGTTGCCGCGAGATTCTGCCAAAGTCGGTATTGCATCGGTGGGAGAAGTCATTGCGTGAAGCTGCTGTTCTTGAGAGCGAGAGCAAGAGATTCCTGTATGACCGCCGCTCCAACGATGGTCCACACCCTAGGCAGATGTGCGTCACGTGCACGGATGAAGATAGAATGATGATGAAGTTAGCGGAGAGGAACGGGTGGAAGAGGTGCCCAAAGTGCAGGTTCTACGTTGAGAAGAAACCTTTCACGTGCAGTAGAATACTTTGCAGGTGTGGACATGTCTTCTGCTATGGCTGTGGCGGTTCCCCCTGTGGCGGTTCCCCCTGTGTCGGTTCCACCTGTGGCGGTTCCGCCTTCTTTCCTCCATCATGGTTTATTGGTCTGTCAATTCTATTTGGATTTATCATTCTTTTTATACGTTTGACTGAAGGTAAAAACTCAGATGCACTCGACTTCATATGA 747 0.49 MTNSNAVENHRNNVGVATKQTKKINREEKGKSSSISSFVCEICIVTKTEAESFTISGCTHSYCTDCVVKYVCSKLDDNVINIRCPVPRCRGLLETNGCREILPKSVLHRWEKSLREAAVLESESKRFLYDRRSNDGPHPRQMCVTCTDEDRMMMKLAERNGWKRCPKCRFYVEKKPFTCSRILCRCGHVFCYGCGGSPCGGSPCVGSTCGGSAFFPPSWFIGLSILFGFIILFIRLTEGKNSDALDFI* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0584 248 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Ahy20g0584 248 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 147 196 IPR031127 GO:0004842|GO:0016567
Ahy20g0584 248 SUPERFAMILY RING/U-box 37 117 - -
Ahy20g0584 248 ProSiteProfiles TRIAD supradomain profile. 36 248 IPR044066 -
Ahy20g0584 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 120 IPR013083 -
Ahy20g0584 248 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 127 IPR031127 GO:0004842|GO:0016567
Ahy20g0584 248 Gene3D - 140 210 - -
Ahy20g0584 248 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 127 - -
Ahy20g0584 248 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 147 196 - -
Ahy20g0584 248 ProSiteProfiles Zinc finger RING-type profile. 40 88 IPR001841 -
Ahy20g0584 248 SUPERFAMILY RING/U-box 149 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0584 Ahy-Chr20 6221899 6222645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0584 33 210 ARIADNE family AT3G27710 22.222 1.79e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0584 K11975 - dcr:108211421 152.525