Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0538 ATGGGCTACGATGAACAACTCAAACCGTGCCGGAATAACTTGCCGGAATCCTCCAATCCCCGGCGAGTTGTCAACCTTATTTCATCCCTAATCTCCATCTCCCTCTCGATTAGGGTCTTCGCCGGAAAATGGCAACTGATTCGCAACAAGCTCGAGGAGCTCTACTCCGGTCTAGTCGGAGCCGACGACGACCCTTCACTCTCCGGCGTTCTCCCTGCGATCCTCTCCACCGCGGAGGAGTGTTCCGACCTAGCTCGCCGCTGCACCGATCTGACATACAGCGGGAAGCTTCTTATGCAGAGCGACTTAGAGGTGGTTTTCGCGAAGCTCCATTGCCATGTGAAGAAGCTGTCTGAGATGTACACGAAGGGTGTTCTCACACACAGCTACGCTCTGGTGGTCTCAAAGCCTGGACTTGGAGCTTCCAAAGAGGACATGAGGTTCTTCGTGAGGGACCTACTCACCAGAATGAAGGTTGGCGATGTTGCTATGAAGAAGCAGGCATTGATCAACCTCCACGAAGTTGCTTCCGAAGACGACAAGTACGTGAAGGTGATTGTTGAAGTCGGTGACGTTGTTCATGTTCTAGTTGATTTTCTAGGGTCCTCTGAGTTGGAGATTCAACAAGAGTCTGCAAAGGTAGTTTCTTTGATTGCGGGGTTTGATTCTTATAAAGGAGTTCTTGTTGGCGCTGGTGTTGTTGCGCCTTTGGTTAAGGTTTTGGAGTGTTCAAGTGAGACTGGCAAAGTTGCTGCTGCCTTGTGTCTGCTGAGTTTGACTGAGAATTCCGATAATGCTTGGTCGGTTTCCGCTCACGGCGGCGTCACGGCGTTGTTGAAGATTTGTGGCGGTGTAGATTGCAGAGCAGAATTGGTTTGTCCTGCTTGTGGAGTTCTGAGGAATCTGGTTGGTGTTGAAGAGATTAAGAGGTTCATGGTTGATGAAGGTGCCGTTTCAAGCTTCATTAGGCTTATGAGGTCAAGGGACGAAGCGATTCAGGTGAGTTCCATTGAGTTTCTTCAGAGTATTGCATCGGGAGATGAGTCATTGGTTAAGCAGATTGTTGTTAGAGAAGGCGGGGTTCGTGTTTTGCTGCGACTTTTGGATCCTAAATGGCCTTGTTCTTCCAAAACAAGAGAGGTAGTGATGAGGGCTATTGAGAATTTGTTCTTCTCTTGGTCTAGTTGTGTCACTATTTTGATGAGCTATGGTTTTGTGGATCAATTGATGTACTATATTCGAAACGGCGACGTTTCTGTTCAAGAATTGGCTCTCAAAGTTGCGTTTAGATTGTGTGGAACATGTGAAGATGCTAAGAAAGCTCTAGGTGATGCTGGATTCATGGCAGAGCTTGTTAAGTTTCTAAATGTGAAATCATTCGAGGTTCGAGAAATGGCGGCGGAGGCACTCTCCGGGATGGTTATGGTTGCCAAGAACAGGAAGAGGTTTGTGCAAGATGATGAAAGCATTGCTCTTCTTCTGCAGTTGTTGGATCCAGAGGAAGGGAATTCAGGTAACAACAAGTTCTTGATCTCTGTATTGATGTCATTGACGCATTGCAACAGTGGGAGGAAGAAGATTGTGAGTTCTGGGTATGCAAAGAACATAGAGAGGCTTGCATCAGAATCTCAAGTTTCTTCTGCTGACGCAAAGAGACTTGTCAGGAAGCTATCCACCAATACATTCCGCACCATGCTCAGTGGAATCTGGCACCACCACCACCACCACCACTCTTGA 1737 0.4767 MGYDEQLKPCRNNLPESSNPRRVVNLISSLISISLSIRVFAGKWQLIRNKLEELYSGLVGADDDPSLSGVLPAILSTAEECSDLARRCTDLTYSGKLLMQSDLEVVFAKLHCHVKKLSEMYTKGVLTHSYALVVSKPGLGASKEDMRFFVRDLLTRMKVGDVAMKKQALINLHEVASEDDKYVKVIVEVGDVVHVLVDFLGSSELEIQQESAKVVSLIAGFDSYKGVLVGAGVVAPLVKVLECSSETGKVAAALCLLSLTENSDNAWSVSAHGGVTALLKICGGVDCRAELVCPACGVLRNLVGVEEIKRFMVDEGAVSSFIRLMRSRDEAIQVSSIEFLQSIASGDESLVKQIVVREGGVRVLLRLLDPKWPCSSKTREVVMRAIENLFFSWSSCVTILMSYGFVDQLMYYIRNGDVSVQELALKVAFRLCGTCEDAKKALGDAGFMAELVKFLNVKSFEVREMAAEALSGMVMVAKNRKRFVQDDESIALLLQLLDPEEGNSGNNKFLISVLMSLTHCNSGRKKIVSSGYAKNIERLASESQVSSADAKRLVRKLSTNTFRTMLSGIWHHHHHHHS* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0538 578 Gene3D - 149 578 IPR011989 -
Ahy20g0538 578 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 316 360 IPR000225 GO:0005515
Ahy20g0538 578 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 571 - -
Ahy20g0538 578 SMART arm_5 435 475 IPR000225 GO:0005515
Ahy20g0538 578 SMART arm_5 305 345 IPR000225 GO:0005515
Ahy20g0538 578 SMART arm_5 179 220 IPR000225 GO:0005515
Ahy20g0538 578 SMART arm_5 262 304 IPR000225 GO:0005515
Ahy20g0538 578 SMART arm_5 221 261 IPR000225 GO:0005515
Ahy20g0538 578 SMART arm_5 347 391 IPR000225 GO:0005515
Ahy20g0538 578 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 571 - -
Ahy20g0538 578 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 317 IPR000225 GO:0005515
Ahy20g0538 578 SUPERFAMILY ARM repeat 143 541 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0538 Ahy-Chr20 5611051 5613436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0538 150 424 U-box Gene Family AT2G23140 24.731 4.65e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0538 - - gmx:100783537 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0538 20 5611051 5613436 Ahy10g0350 10 3236338 3238667 hybridization
Ahy3g2985 3 126528688 126530831 Ahy20g0538 20 5611051 5613436 PCT
Ahy20g0538 20 5611051 5613436 Ahy3g2985 3 126528688 126530831 PCT