Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0498 ATGGATAACATTGTAGTAGAGAGTACTACTACTTTGGGTTATATATATATAATAATGCTTTTCCTATCATTGAAACATGAAATAGTAGCAGCAGGAGATAACAACAGTGCCATTGATGACCTTGTGACTAACTTGCCTGGCCAGCCTCTTGTAGATTTCAAGCACTATGCTGGTTATGTCACTGTTAATGATGACACCAATAATGGAGAAAGAGCACTCTTCTATTGGTTTTTTGAAGCCATCACCAACCCTCAAGATAAACCATTGGTGCTGTGGCTCAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACACAGATGGCAAGGGCCTTAAATTTAATAACTACTCTTGGAACAAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTAGGCTTTTCCTACTCAAATTCAACTATAGACTATGAAAATCTGGATGATGATATCACAGCTAATGATGCTTACAATTTTCTGCACAATTGGTTTCTCAAGTTTCCATCATATAGAACAAGCACATTTTATATAGCAGGAGAGAGCTATGCTGGGAAGTATGTACCTGAGCTAGCAGAACTGATATATGATAGGAAAGATGACCCTTCCCTTCATATTAATCTCAAGGGTATTTTGTTGGGGAATCCTGAAACATCTGATCCTGAAGACTTGTTAGGGCAAGTTGATTACGCTTGGAGCCATGCAGTGATATCTGATGAAACCTACAAAACAATAAGAAGAAGTTGTAACTTCAGTGATCCATATAAAAACAAAGATTGTGGTGATGGACTTGATGAACTTTATAAGCAATACGACCAAATTGATATTTATAGCCTCTACACCTCTGTTTGTTTTGCCACCACAGCGCTTTCAAATCATCAAAATTTACAAACACAAATCAACCACTCATCTAGGAACAAGATGCGTAGAATGATGGGAGGTTTTGATCCATGCTTGGATAATTATGCCAGAGCCTTTTATAATAGAGCAGATGTTCAGAAAGCTCTCCATGCCAGTGATGGTCTCATTCTCAAGAATTGGACTATTTGCAACGACGATATATTCAATAGTTGGAATTGGAACAAATCAAAGGCCTCTGTTATCCCAATATACAGGAAGCTTATTTCAGGAGGACTTAGGATTTGGGTTTATAGTGGAGACACAGATGGAAGAGTGCCAGTGCTTTCTACAAGATACAGCTTAAGTATTCTGGGTTTGGGAATCACTAAGCAATGGAGGCCATGGTACCATGAGAAACAGGTTAGTGGGTGGTATCAAGAATACGAGGGTCTCACTTTTGCAACATTTCGAGGAGCTGGCCATGCTGTCCCTTCTTTCAAACCAAGCAATTCACTTGCATTCTTCTCTTCCTTCCTTCTTGGACAATCTCCACCCTCTACTAGATCTACATGA 1443 0.3971 MDNIVVESTTTLGYIYIIMLFLSLKHEIVAAGDNNSAIDDLVTNLPGQPLVDFKHYAGYVTVNDDTNNGERALFYWFFEAITNPQDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGLKFNNYSWNKEANMLFLESPVGVGFSYSNSTIDYENLDDDITANDAYNFLHNWFLKFPSYRTSTFYIAGESYAGKYVPELAELIYDRKDDPSLHINLKGILLGNPETSDPEDLLGQVDYAWSHAVISDETYKTIRRSCNFSDPYKNKDCGDGLDELYKQYDQIDIYSLYTSVCFATTALSNHQNLQTQINHSSRNKMRRMMGGFDPCLDNYARAFYNRADVQKALHASDGLILKNWTICNDDIFNSWNWNKSKASVIPIYRKLISGGLRIWVYSGDTDGRVPVLSTRYSLSILGLGITKQWRPWYHEKQVSGWYQEYEGLTFATFRGAGHAVPSFKPSNSLAFFSSFLLGQSPPSTRST* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0498 480 PANTHER CARBOXYPEPTIDASE 33 474 - -
Ahy20g0498 480 Gene3D alpha/beta hydrolase 37 296 IPR029058 -
Ahy20g0498 480 Pfam Serine carboxypeptidase 47 469 IPR001563 GO:0004185|GO:0006508
Ahy20g0498 480 Gene3D - 328 364 - -
Ahy20g0498 480 ProSitePatterns Serine carboxypeptidases, serine active site. 188 195 IPR018202 GO:0004185
Ahy20g0498 480 Gene3D - 377 471 - -
Ahy20g0498 480 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 474 IPR001563 GO:0004185|GO:0006508
Ahy20g0498 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 441 454 IPR001563 GO:0004185|GO:0006508
Ahy20g0498 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 137 IPR001563 GO:0004185|GO:0006508
Ahy20g0498 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 199 IPR001563 GO:0004185|GO:0006508
Ahy20g0498 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 148 IPR001563 GO:0004185|GO:0006508
Ahy20g0498 480 SUPERFAMILY alpha/beta-Hydrolases 39 473 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0498 Ahy-Chr20 5084519 5088536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0498 311 472 Calmodulin-binding Proteins AT2G22960 29.825 1.94e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0498 K16297 - gmx:100819700 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0498 20 5084519 5088536 Ahy20g0498 20 5084519 5088536 ECH
Ahy20g0498 20 5084519 5088536 Ahy14g0467 14 6202261 6205357 ECH
Ahy20g0498 20 5084519 5088536 Ahy10g0313 10 2885192 2889112 hybridization
Ahy13g3291 13 129783738 129786359 Ahy20g0498 20 5084519 5088536 PCT
Ahy3g3029 3 127236187 127238608 Ahy20g0498 20 5084519 5088536 PCT
Ahy20g0498 20 5084519 5088536 Ahy13g3291 13 129783738 129786359 PCT
Ahy20g0498 20 5084519 5088536 Ahy3g3029 3 127236187 127238608 PCT