Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0495 ATGGATTCATGTCAACCCCAACTCCCACCGGGATTCAGGTTCCACCCAACCGACGAAGAACTCATCGTTCACTACCTCAAGAGAAAAGCTTCCTCTGCTCCTCTCCCCGTCGCCATCATCGCCGACGTTGATCTCTACAAGTTCGACCCATGGGAGCTTCCAAGTAAGGCCACGTTTGGGGAGCAAGAATGGTATTTCTTTAGTCCGAGGGATCGCAAGTATCCGAATGGGGCTCGCCCAAACAGAGCAGCTACGTCCGGATATTGGAAGGCCACCGGCACTGATAAGCCTATTATTGCGTCTGATGGCCAACACCGACTCGGCGTCAAGAAAGCTCTCGTCTTCTATGGTGGCAAGCCTCCTAAAGGGGTTAAAACCAATTGGATCATGCACGAATATAGACTCACTACTACTCATAACAACAATTCTATCTCATCATCAAAGTCTTTTCCTTCTCTTCCTTCTCATCTTCCTTCCGCCAATAACAAGAAGAATTCCTTGAGGCTTGATGATTGGGTGTTGTGCCGAATATATGAAAAAAGCAACCGTGGCAATTTTGCAAGAACAGCGTTGATGGAGCACCATGATCATGATGATGATGATGATGACAATAAGGATCAGCTTTCCGCGGAAACAACGAGTATGATAGAAAACATGTCCACGATGAGTAGTCAGAATTCCAAGCCCACACAACATTATGGACCATTGCTGGTTCAAAACGATGACAACTTCTTCGATGGAATCTTAGCTGCTGATCATCATAATCAACAACACAACTTGCCAATGAAGAGGACACTGGTGAATATGAATAATTCACAGTTTTGGAATGAGACAAACAAGAGGTTCCATTGTGATCTCAATAACAACACTAACATTGTTGCTAATAATGATGAGGATAACACTTCCTTTGTTTCACTGCTTAGCCATAATCAGATTCCTCATCATCCTACTAACAATGCTTCTCTTCTTGACCCTACTGTTGCTGATGGTGTTTTCAGGCAACACTTTCAACTTCAAGCAATTAATTGGAACTTATAG 1038 0.4393 MDSCQPQLPPGFRFHPTDEELIVHYLKRKASSAPLPVAIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIIASDGQHRLGVKKALVFYGGKPPKGVKTNWIMHEYRLTTTHNNNSISSSKSFPSLPSHLPSANNKKNSLRLDDWVLCRIYEKSNRGNFARTALMEHHDHDDDDDDNKDQLSAETTSMIENMSTMSSQNSKPTQHYGPLLVQNDDNFFDGILAADHHNQQHNLPMKRTLVNMNNSQFWNETNKRFHCDLNNNTNIVANNDEDNTSFVSLLSHNQIPHHPTNNASLLDPTVADGVFRQHFQLQAINWNL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0495 345 PANTHER NAC TRANSCRIPTION FACTOR 56-LIKE 5 318 - -
Ahy20g0495 345 MobiDBLite consensus disorder prediction 143 162 - -
Ahy20g0495 345 PANTHER NAC TRANSCRIPTION FACTOR 56 5 318 - -
Ahy20g0495 345 SUPERFAMILY NAC domain 5 180 IPR036093 GO:0003677|GO:0006355
Ahy20g0495 345 ProSiteProfiles NAC domain profile. 8 180 IPR003441 GO:0003677|GO:0006355
Ahy20g0495 345 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Ahy20g0495 345 Gene3D NAC domain 17 185 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0495 Ahy-Chr20 5058449 5060346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0495 5 344 NAC Transcription Factor Family AT1G61110 50.143 5.37e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy20g0495 NAM 2.20E-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0495 - - aip:107624204 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0495 20 5058449 5060346 Ahy10g0311 10 2874771 2876506 hybridization
Ahy13g3292 13 129792073 129793948 Ahy20g0495 20 5058449 5060346 PCT
Ahy3g3030 3 127244135 127245722 Ahy20g0495 20 5058449 5060346 PCT
Ahy20g0495 20 5058449 5060346 Ahy13g3292 13 129792073 129793948 PCT
Ahy20g0495 20 5058449 5060346 Ahy3g3030 3 127244135 127245722 PCT